View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020-Insertion-18 (Length: 234)
Name: NF5020-Insertion-18
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-18 |
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| [»] scaffold0267 (1 HSPs) |
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| [»] scaffold0128 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 33637539 - 33637316
Alignment:
| Q |
8 |
attattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgc |
107 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33637539 |
attagtatgtataataggagagatgatagagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggtttttc |
33637440 |
T |
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| Q |
108 |
cccatcctcttccacattaagcttctatgcaacaactgtttgtattttgaatttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaa |
207 |
Q |
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||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33637439 |
cccgtcctcttccacattaagcttctatgcaacaattgtttgtattttgaatttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaa |
33637340 |
T |
|
| Q |
208 |
ttgtgttttcaatagatagtttaa |
231 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
33637339 |
ttgtgttttcaatagatagtttaa |
33637316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 13615 - 13785
Alignment:
| Q |
60 |
acaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaa |
158 |
Q |
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||||||||||| | |||||||||||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||| ||||||| ||| |||| |
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| T |
13615 |
acaaccaaattcgttatgctgatgaacatatgcagagcttggttttgccttgtcctcgtccacattaatctcgtatgcaacaaatgtttgtttttctgaa |
13714 |
T |
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| Q |
159 |
tttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagttt |
229 |
Q |
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| T |
13715 |
tttatgttaggttgtgcatttggcatgatatctattgatggttctttaattatgttttccttagatagttt |
13785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 60 - 229
Target Start/End: Original strand, 3838134 - 3838304
Alignment:
| Q |
60 |
acaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaa |
158 |
Q |
| |
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||||||||||| | |||||||| ||||||||| |||||||||||||||| ||||| |||||||||| || |||||||||||||||||| ||| |||| |
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| T |
3838134 |
acaaccaaattcgttatgctgaggaacatatgcagagcttggttttgccttgtcctcatccacattaatctcgtatgcaacaactgtttgtttttctgaa |
3838233 |
T |
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| Q |
159 |
tttatgttaggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagttt |
229 |
Q |
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|||||||||||| |||| | | |||| ||||| ||||||| |||||| ||||||| |||||||||| |
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| T |
3838234 |
tttatgttaggttttgcatttggcatgatatctattgatggttctttaattatgttttccttagatagttt |
3838304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 29125102 - 29125230
Alignment:
| Q |
10 |
tattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgccc |
109 |
Q |
| |
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||||||||||| |||||||||||||| || | |||||| |||||| || |||||||| ||||||| ||||||||||| |||| ||||||||||| |
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| T |
29125102 |
tattatgtatagtaggagagatgatagagttagtcatattagacttctcaaccaccaaattatgtatgctcatgaacatatgtagagtttggttttgcct |
29125201 |
T |
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| Q |
110 |
catcctcttccacattaagcttctatgca |
138 |
Q |
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| T |
29125202 |
cttcctcatccgcattaagcttctatgca |
29125230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 234
Target Start/End: Original strand, 29126661 - 29126826
Alignment:
| Q |
69 |
tttggtatgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttg-tattttgaatttatgtta |
167 |
Q |
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||||||||| | |||||||||| | |||||| ||||||| |||| |||| |||||| ||||||||||||||| |||| | |||| ||| || ||| |
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| T |
29126661 |
tttggtatgtcggtgaacatatgcatagcttgattttgcctcatctcattcc-cattaaacttctatgcaacaacaatttgatttttttaatatacatta |
29126759 |
T |
|
| Q |
168 |
ggtcgtgcaagtagtgtgatgactattaatggttccttaattgtgttttcaatagatagtttaatta |
234 |
Q |
| |
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|| |||||||| ||||||| |||||| | |||||||||||||||||| || ||||||| |||| |
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| T |
29126760 |
agttgtgcaagtggtgtgataactattgaatattccttaattgtgttttccttaaatagtttgatta |
29126826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 13784247 - 13784126
Alignment:
| Q |
9 |
ttattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgcc |
108 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||| | || || ||| | ||||| |||||||| || |||||||||||| | |||||||||||||| |
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| T |
13784247 |
ttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaacaaaatttgggcggccgatgaacatatgcatagcttggttttgcc |
13784148 |
T |
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| Q |
109 |
ccatcctcttccacattaagct |
130 |
Q |
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||| ||| ||||||||||||| |
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| T |
13784147 |
tcattctcatccacattaagct |
13784126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 135
Target Start/End: Complemental strand, 33907 - 33781
Alignment:
| Q |
9 |
ttattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttgcc |
108 |
Q |
| |
|
|||||||||||||| |||||||||||| || | || | || ||||| | |||||||||||||| || |||||||||||| |||||||||||||| |
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| T |
33907 |
ttattatgtataatcggagagatgatatagttcaatttcttcgacttcctaacaaccaaatttgggcggccgatgaacatatgcgtagcttggttttgcc |
33808 |
T |
|
| Q |
109 |
ccatcctcttccacattaagcttctat |
135 |
Q |
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| ||||| ||||||||||||| |||| |
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| T |
33807 |
tcgtcctcatccacattaagctcctat |
33781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 20475806 - 20475663
Alignment:
| Q |
75 |
atgctgatgaacatatgaagagcttggttttgccccatcctcttccacattaagcttctatgcaacaactgtttgtattt-tgaatttatgttaggtcgt |
173 |
Q |
| |
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||||| |||| |||||| |||||||||||||||| | |||| |||| |||||||| | ||||||||||| ||| | ||| ||||||||| |||| | | |
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|
| T |
20475806 |
atgctcatgagcatatgcagagcttggttttgcctcgtccttgtccaaattaagctgcaatgcaacaactatttatttttctgaatttattttagattat |
20475707 |
T |
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| Q |
174 |
gcaagtagtgtgatgactattaatggttccttaattgtgttttc |
217 |
Q |
| |
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| |||| | || | || ||| |||||| ||||||||||||||| |
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| T |
20475706 |
gtaagtggcatgtttacgattgatggttacttaattgtgttttc |
20475663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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