View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5020-Insertion-2 (Length: 1190)
Name: NF5020-Insertion-2
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 8 - 509
Target Start/End: Complemental strand, 25518114 - 25517614
Alignment:
| Q |
8 |
acttgtctgacaaccaagaaggtttaagttactcaaaaaagatggatgtcatgtaacattgtcgcaataaattaagaaaggnnnnnnnggaacagtttat |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25518114 |
acttgtctgacaaccaagaaggtttaagttactcaaaaaagatggatgtcatgtaacattgtcgcaataaattaagaaaggaaaaaaaggaacagtttat |
25518015 |
T |
|
| Q |
108 |
catgttttaagcaacgtcatatgtttgtaaataatacggtttaccagcctcaagtggatatccttaaaccaaatataaaaatcactgaaatgatgaagca |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25518014 |
catgttttaagcaacgtcatatgtttgtaaataatacggtttaccagcctcaagtagatatccttaaaccaaatataaaaatcactgaaatgatgaagca |
25517915 |
T |
|
| Q |
208 |
gacagttttaaagattagcttataaacttttgagaaatatgaagattgatattgcacttgttgcaaaaacaacaagttggtcattatttataattatggt |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517914 |
gacagttttaaagattagcttataaacttttgagaaatatgaagattgatattgcacttgttgcaaaaacaacaagttggtcattatttataattatggt |
25517815 |
T |
|
| Q |
308 |
gtatgaagtgctaatctgccaatgacatctcttttgagaaatattacttttgctgcaaaatgtgagaagtgtcttacatttaacataaacaagcaatttt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25517814 |
gtatgaagtgctaatctgccaatgacatctcttttgagaaatattacttttgctgc-aaatgtgagaagtgtcttacatttaacataaacaagcaaattt |
25517716 |
T |
|
| Q |
408 |
aacaacaaaaatcatggatgaacaagaaaaaaccacgtacatgaagaaatgaatggaacatgcaaaaatcacgacataaaaagcaggcaaatcgacccaa |
507 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
25517715 |
aacaacaaaaatcatggatgaacaagaaaaaaccacgtacatgaagaaatgaatggaacatgcaaaaatcatgacataaaaagcaggcaaatcgacccaa |
25517616 |
T |
|
| Q |
508 |
aa |
509 |
Q |
| |
|
|| |
|
|
| T |
25517615 |
aa |
25517614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 589 - 1022
Target Start/End: Complemental strand, 25517229 - 25516794
Alignment:
| Q |
589 |
aataaaccataaaatttgaaaattgtaggagcgaatggtaaaatatgagtaatcagctaatgcatcagcaaccaatttcactgaggaatgttacctattc |
688 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
25517229 |
aataaaccataaaatttgaaaattgtaggagcgaatggtaaaatatgagtaatcagctaacgtatcagcagccaatttcactgaggaacgttacctattc |
25517130 |
T |
|
| Q |
689 |
catctatcatatttaccattataaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaatggactactagtttcatgggtcc |
788 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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|
| T |
25517129 |
catctatcatatttaccatta-aaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaaaggacttctagtttcatgggtcc |
25517031 |
T |
|
| Q |
789 |
ttaacttagtttcctttacctctttggcaacacactcagccataagaagaaaagggacagaacatccctttgatacttgttcatatcaagaatgtgacac |
888 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25517030 |
ttaacttagtttcctttagctctttggcaacacactcagccataagaagaaaagggacagaacatccctttgatacttgttcatatcaagaatgtgacac |
25516931 |
T |
|
| Q |
889 |
attac-aatgagtgactatgtaac-aagcc-cagaattcttgag-aaacccctcttatttcttatttctaagactgcacaataagaaa--gatcacgttt |
982 |
Q |
| |
|
||||| |||| ||||||||||||| ||||| || |||||||||| |||||||||||||||| || | || |||||||||||| ||||||||| |
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|
| T |
25516930 |
attacaaatgtgtgactatgtaacaaagccgcaaaattcttgagaaaacccctcttatttc-----tcagactctacacaataagaaaagaatcacgttt |
25516836 |
T |
|
| Q |
983 |
cg-actttgc-aactcctttcataggagagaatctccttatt |
1022 |
Q |
| |
|
|| ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25516835 |
cgaactttgcaaactcctttcataggagagaatctccttatt |
25516794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 166; E-Value: 3e-88
Query Start/End: Original strand, 589 - 946
Target Start/End: Original strand, 25524869 - 25525223
Alignment:
| Q |
589 |
aataaaccataaaatttgaaaattgtaggagcgaatggtaaaatatgagtaatcagctaatgcatcagcaaccaatttcactgaggaatgttacctattc |
688 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||| || |||||| |||||||||||||||||||||||||||| ||| |
|
|
| T |
25524869 |
aataaaccataaaatctgaaaattataggagcgaatggtaaattattagtaatcagtcaacgcatcatcaaccaatttcactgaggaatgttacctgttc |
25524968 |
T |
|
| Q |
689 |
catctatcatatttaccattataaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaatggactactagtttcatgggtcc |
788 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||| ||| | || |
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|
| T |
25524969 |
catctatcatattaaa------aaaaaacggctcctagagttgcatttgttgcgagcactcaaatcgtcaaagccaaaggactactagcttcgttggaga |
25525062 |
T |
|
| Q |
789 |
tt-aacttagtttcctttacctctttggcaacacactcagccataagaagaaaagggacagaacatccctttgatacttgttcatatcaagaatgtgaca |
887 |
Q |
| |
|
|| |||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |
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|
| T |
25525063 |
tttaacttagtttcctttagctctttggcaacacactcagtcatatgaagaaaagggacaggacatcccttgaatatgtgttcatatcaagaatgtgaca |
25525162 |
T |
|
| Q |
888 |
cattacaatgagtgactatgtaacaag-cccagaattcttgag-aaacccctcttatttct |
946 |
Q |
| |
|
||||| ||| ||||| | ||||| || |||||||||||| || ||| ||||||||||||| |
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|
| T |
25525163 |
cattatgatgtgtgaccaagtaactagccccagaattcttaagaaaaaccctcttatttct |
25525223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 589 - 775
Target Start/End: Original strand, 25540404 - 25540590
Alignment:
| Q |
589 |
aataaaccataaaatttgaaaattgtaggagcgaatggtaaaatatgagtaatcagctaatgcatcagcaaccaatttcactgaggaatgttacctattc |
688 |
Q |
| |
|
|||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| | ||| |
|
|
| T |
25540404 |
aataaatcttaaaatctgaaaattgtaggagcaaatggtaaaatatgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttc |
25540503 |
T |
|
| Q |
689 |
catctatcatatttaccattataaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaatggactacta |
775 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
25540504 |
catctatcaaatttaccattatatagaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagctaaaggactacta |
25540590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 420 - 509
Target Start/End: Original strand, 25539874 - 25539963
Alignment:
| Q |
420 |
catggatgaacaagaaaaaaccacgtacatgaagaaatgaatggaacatgcaaaaatcacgacataaaaagcaggcaaatcgacccaaaa |
509 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||||| |||| |
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|
| T |
25539874 |
catggataaacaagaaaaaaccacgtacatgaagaaatgaatggaacatgcaaaaatcatgacaaagaaagcaagcaaatcgacctaaaa |
25539963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 747 - 879
Target Start/End: Original strand, 25537546 - 25537678
Alignment:
| Q |
747 |
ctcgaatcctcaaagccaatggactactagtttcatgggtccttaacttagtttcctttacctctttggcaacacactcagccataagaagaaaagggac |
846 |
Q |
| |
|
|||||||||||||||| || |||||| | |||| ||| | |||||||| |||| |||| ||||||||||||||||||| |||| |||| |||||||| |
|
|
| T |
25537546 |
ctcgaatcctcaaagcaaaaggactagcaacttcaaggggctttaacttaatttcatttatctctttggcaacacactcattcatatgaaggaaagggac |
25537645 |
T |
|
| Q |
847 |
agaacatccctttgatacttgttcatatcaaga |
879 |
Q |
| |
|
|||||||||||| |||||||||||||| |||| |
|
|
| T |
25537646 |
agaacatcccttgaatacttgttcatataaaga |
25537678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 344 - 426
Target Start/End: Original strand, 25539772 - 25539854
Alignment:
| Q |
344 |
agaaatattacttttgctgcaaaatgtgagaagtgtcttaca-tttaacataaacaagcaattttaacaac-aaaaatcatggat |
426 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
25539772 |
agaaatattacttttgctgc-aaatgtgataagtgtcttacattttaacataaacaag-aaaattaacaacaaaaaatcatggat |
25539854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 707 - 895
Target Start/End: Original strand, 44461014 - 44461196
Alignment:
| Q |
707 |
ttataaaaaacagctcctagagttgcatttgttgcgagcactcgaatcctcaaagccaatggactactagtttcatgggtccttaacttagtttccttta |
806 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||| |||||| || |||| | | | ||||||||| |||||| | |
|
|
| T |
44461014 |
ttataaaaaccagctgctagagttgcatttgttgcaagcactccaatcctcaaag------gactaccagcttcaagtggctttaacttagcttccttaa |
44461107 |
T |
|
| Q |
807 |
cctctttggcaacacactcagccataagaagaaaagggacagaacatccctttgatacttgttcatatcaagaatgtgacacattacaa |
895 |
Q |
| |
|
||| || |||||||||||||||||| |||||||||| |||||||| || | |||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
44461108 |
gctcctttgcaacacactcagccatatgaagaaaaggaacagaacaacctatggatacttgttcataccaagaatgtgaaacattacaa |
44461196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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