View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020-Insertion-21 (Length: 273)
Name: NF5020-Insertion-21
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-21 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 112 - 266
Target Start/End: Original strand, 35968767 - 35968921
Alignment:
| Q |
112 |
ccaagtctttgtaacccaggaataatttcaaccaagcttgaatctttatcttcctctgagaaaacaaaacccagatccataaacccttttagctcctcaa |
211 |
Q |
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| T |
35968767 |
ccaagtctttgtaacccaggaataatttcaaccaagcttgaatctttatcttcctctgagaaaacaaaacccagatccataaaaccttttagctcctcaa |
35968866 |
T |
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| Q |
212 |
attcaaggtcagataaactcttactttctcttttcttcttaacaaccttgttgat |
266 |
Q |
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| T |
35968867 |
attcaaggtcagataaactcttactttctcttttcttcttaacaaccttgttgat |
35968921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 35968660 - 35968730
Alignment:
| Q |
8 |
tttttctccaatcataaacctcccaagcttcggaaagataaggtctttgaaccacagattcatcataaaca |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35968660 |
tttttctccaatcataaacctcccaagcttcggaaagataaggtctttgaaccacagattcatcataaaca |
35968730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 246
Target Start/End: Original strand, 5183444 - 5183549
Alignment:
| Q |
141 |
aaccaagcttgaatctttatcttcctctgagaaaacaaaacccagatccataaacccttttagctcctcaaattcaaggtcagataaactcttactttct |
240 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| |||||||| ||||||||||| ||| | |
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| T |
5183444 |
aaccaagcttgtgtctttatcttcctctgagaaaacaaaaccaagatccatgaacccttttacctcctcaaactcaaggtctgataaactcttgcttcca |
5183543 |
T |
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| Q |
241 |
cttttc |
246 |
Q |
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|
|||||| |
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| T |
5183544 |
cttttc |
5183549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 35219497 - 35219408
Alignment:
| Q |
141 |
aaccaagcttgaatctttatcttcctctgagaaaacaaaacccagatccataaacccttttagctcctcaaattcaaggtcagataaact |
230 |
Q |
| |
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|||||| | |||||||||||||||||| || || |||||||| | ||||||||||||||||||||||| ||| ||||| || |||||||| |
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| T |
35219497 |
aaccaatcctgaatctttatcttcctcagaaaacacaaaacctaaatccataaacccttttagctccttaaactcaagctctgataaact |
35219408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 31166749 - 31166623
Alignment:
| Q |
112 |
ccaagtctttgtaacccaggaataatttcaaccaagcttgaatctttatcttcctctgagaaaacaaaacccagatccataaacccttttagctcctcaa |
211 |
Q |
| |
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|||||||||||||| ||||| || | | |||||| ||||||||||||||||||| || || |||||||||| ||||||||||||||||||||| | || |
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| T |
31166749 |
ccaagtctttgtaaaccaggtatcaatgaaaccaattttgaatctttatcttcctcagaaaacacaaaacccaaatccataaacccttttagctctttaa |
31166650 |
T |
|
| Q |
212 |
attcaaggtcagataaactcttacttt |
238 |
Q |
| |
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| ||||| || ||||||||| |||||| |
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|
| T |
31166649 |
actcaagctctgataaactcctacttt |
31166623 |
T |
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