View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020-Insertion-5 (Length: 314)
Name: NF5020-Insertion-5
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-5 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 166; Significance: 8e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 7 - 176
Target Start/End: Complemental strand, 9798286 - 9798117
Alignment:
| Q |
7 |
agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg |
106 |
Q |
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| T |
9798286 |
agaatgtagctaagttaacaatgatatgttagtagatttgctttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctg |
9798187 |
T |
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| Q |
107 |
cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcatttcttcgaagg |
176 |
Q |
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| T |
9798186 |
cataattacttgcgggtagttgggtttggaaatttggtgctaaagggggttgttgtcattttttcgaagg |
9798117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 176 - 314
Target Start/End: Original strand, 45177109 - 45177247
Alignment:
| Q |
176 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac |
275 |
Q |
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| T |
45177109 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatttgagcaggttggaattgctaataacac |
45177208 |
T |
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| Q |
276 |
tggctatgatgagattcatgatgttcatagcttagtagc |
314 |
Q |
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| T |
45177209 |
ttgctatgatgagattcatgatgttcatagcttagtagc |
45177247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 49 - 176
Target Start/End: Original strand, 45175559 - 45175686
Alignment:
| Q |
49 |
ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta |
148 |
Q |
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| T |
45175559 |
ttgatcctgtaattgaagaacaacttaaggctgctgctttttgtgtaatagatcgctgcataattacttgcgggtagttgggtttggaaatttggtgcta |
45175658 |
T |
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| Q |
149 |
aagggggttgttgtcatttcttcgaagg |
176 |
Q |
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| T |
45175659 |
aagggggttgttgtcatttattcgaagg |
45175686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 44666689 - 44666555
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc |
279 |
Q |
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| T |
44666689 |
gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc |
44666590 |
T |
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| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagc |
314 |
Q |
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| T |
44666589 |
tatgatgagattcttgatgttcatagcttagtagc |
44666555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 44686013 - 44685879
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaa-tttgagcaggttggaattgctaataacactggc |
279 |
Q |
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| T |
44686013 |
gagttcattagtttgtcaagtgtagcacaatatatagtttttaacgtattattatcatccgttttagtttgagcaggctgcaattgctaataacacctgc |
44685914 |
T |
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| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagc |
314 |
Q |
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| T |
44685913 |
tatgatgagattcttgatgttcatagcttagtagc |
44685879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 176 - 314
Target Start/End: Complemental strand, 45093735 - 45093596
Alignment:
| Q |
176 |
gttgagagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataaca |
274 |
Q |
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|||| ||||||||||||||||||| |||| || ||| || || ||||||||||| | | | ||||||| | | |||||||||||||||||||||| ||| |
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| T |
45093735 |
gttgggagttcattattttgtcatttgtagcaaaatgtattgtttttaacgtattgttaccatttgttttagtatgagcaggttggaattgctaattaca |
45093636 |
T |
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| Q |
275 |
ctggctatgatgagattcatgatgttcatagcttagtagc |
314 |
Q |
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| T |
45093635 |
ctggctatcatgtgattcatgatgttcatagcttagtagc |
45093596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 242 - 312
Target Start/End: Complemental strand, 45102876 - 45102806
Alignment:
| Q |
242 |
tttaatttgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagta |
312 |
Q |
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| T |
45102876 |
tttagtttgagcaggttggagttgctaataacactggctatgatgagtttcatgatgttcatagcttagta |
45102806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 249 - 314
Target Start/End: Original strand, 35816689 - 35816754
Alignment:
| Q |
249 |
tgagcaggttggaattgctaataacactggctatgatgagattcatgatgttcatagcttagtagc |
314 |
Q |
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| T |
35816689 |
tgagcaggttggaattgctaattacactggctatggtgagattcatgatgttcatagcttagtagc |
35816754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 314
Target Start/End: Complemental strand, 45568412 - 45568279
Alignment:
| Q |
181 |
gagttcattattttgtcatgtgtaacacaatacatagtctttaacgtattataatcctttgtttaatt-tgagcaggttggaattgctaataacactggc |
279 |
Q |
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| T |
45568412 |
gagttcattatgttgtcatttgtagcacaa-atacagtttttaacatattgttatcatttgttttagtatgagcaggtaggaattgctaattacactggt |
45568314 |
T |
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| Q |
280 |
tatgatgagattcatgatgttcatagcttagtagc |
314 |
Q |
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| T |
45568313 |
tacaatgagattcatgatgttcatagcttagtagc |
45568279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 45094857 - 45094818
Alignment:
| Q |
36 |
tagtagatttgctttgatcctgtaattgaagaacaactta |
75 |
Q |
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| T |
45094857 |
tagtagatttgctttgatcctgcaactgaagaacaactta |
45094818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 45569755 - 45569688
Alignment:
| Q |
77 |
ggctgctgctttttgtgtaatagatcgctgcat-aattacttgcgggtagttgggtttggaaatttgg |
143 |
Q |
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| T |
45569755 |
ggcttctgctttttatgtaatagttcgctgcataaattacttgctggtagtaggatgtggaaatttgg |
45569688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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