View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020-Insertion-6 (Length: 1000)
Name: NF5020-Insertion-6
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 373 - 1000
Target Start/End: Complemental strand, 39809421 - 39808791
Alignment:
| Q |
373 |
atgtatgttgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
472 |
Q |
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| T |
39809421 |
atgtatattgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
39809322 |
T |
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| Q |
473 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
572 |
Q |
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| T |
39809321 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
39809222 |
T |
|
| Q |
573 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgctgctcttcaacggtggtagaagcgccaccaccg |
672 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39809221 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccaccctttgctgctcttcaacggtggtagaagcaccaccaccg |
39809122 |
T |
|
| Q |
673 |
gtggatagtatagcctcaaggtagccattaatccactcattaccagccattaatctcaacctttctttgtattatatatgtaatgtaaaactactataca |
772 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39809121 |
gtggatagtatagcctcaaggtagccattaatccactcattaccagccattaatctcaacctttctttgtattatatatgtaatgtaaaactactataca |
39809022 |
T |
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| Q |
773 |
gtttacaatattcttaaactcaagtactcattctaatatgaagtatgtttcttgaatgttacatgatcaacatggcttatctttatgtaatgttttgtgt |
872 |
Q |
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| T |
39809021 |
gtttacaatattcttaaactcaagtactcattctaatatgaagtatgtttcttgaatgttacatgatcaacatggcttatctttatgtaatgttttgtgt |
39808922 |
T |
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| Q |
873 |
gcagtgttagagaaccacatgcaatgaacgatgtatattgctca-ttttggttcaaatttgtgtgttgtgtattgtattgtc-tttgtg-tagttagtta |
969 |
Q |
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| T |
39808921 |
gcagtgttagagaaccacatgcaatgaacgatgtatattgctcatttttggttcaaatttgtgtgttgtgtattgtgttgtcttttgtgttagttagtta |
39808822 |
T |
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| Q |
970 |
ggcaccgaatataattaacattattccttat |
1000 |
Q |
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| T |
39808821 |
ggcaccgaatataattaacattattccttat |
39808791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 39809736 - 39809454
Alignment:
| Q |
7 |
agaagcatgcctctgaagttttttctgttgagtctcaatttgtattatctccccaatgccatctcccttttctccttctgacaactcttcagacaaatcc |
106 |
Q |
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| T |
39809736 |
agaagcatgcctctgaagttttttctgttgagtctcaatttgtattatctccccaatgccatctcccttttctccctctgacaactcttcagacaaatcc |
39809637 |
T |
|
| Q |
107 |
tctgttgcatcccttcgtccttgctctctttcccatcttctgtatgctaacctttgaagttcctctccttccacctacaaagtatgcctcattagtactc |
206 |
Q |
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| T |
39809636 |
tctgttgcatcccttcgtccttgctctctttcccatcttctgtatgctaacctttgaagttcctctccttccacctacaaagtatgcctcattagtactc |
39809537 |
T |
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| Q |
207 |
tactagtttcaccaaacaaatcaagtgtttgagctgaaacactcaaaaaatgtagaagactaattaagagttcaaactttggt |
289 |
Q |
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| T |
39809536 |
tactagtttcaccaaacaaatcaagtgtttgagctgaaacactcaaaaaatgtagaagactaattaagagttcaaactttggt |
39809454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 429 - 602
Target Start/End: Complemental strand, 15794985 - 15794812
Alignment:
| Q |
429 |
aaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagc |
528 |
Q |
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||||| ||||||||| || |||||||||||||||||||||||||||||||| | ||||| || | ||||||||| || || || ||||| ||||||| | |
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| T |
15794985 |
aacctgcttcttctttcgtgcaagatgccaaatacgccaacacatgttctccaaccttgaacttctttcccttgtgttgcgtgttgcaaccaccttaacc |
15794886 |
T |
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| Q |
529 |
catgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatg |
602 |
Q |
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| T |
15794885 |
caagtgcgatataaatcagattcatcaacacttgccacaacctcttccacaaaatactttgttggattgaaatg |
15794812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 74 - 185
Target Start/End: Complemental strand, 15796025 - 15795914
Alignment:
| Q |
74 |
ttttctccttctgacaactcttcagacaaatcctctgttgcatcccttcgtccttgctctctttcccatcttctgtatgctaacctttgaagttcctctc |
173 |
Q |
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||||||||||||||||| ||||| |||| || ||||| ||||| || |||||||| ||||| ||||||||||||| |||||| || || | |||||| | |
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| T |
15796025 |
ttttctccttctgacaagtcttctgacatgtcttctgtagcatctctgcgtccttgttctctctcccatcttctgtttgctaatctctgtacttcctccc |
15795926 |
T |
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| Q |
174 |
cttccacctaca |
185 |
Q |
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| T |
15795925 |
attccaactaca |
15795914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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