View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5020-Insertion-7 (Length: 880)

Name: NF5020-Insertion-7
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5020-Insertion-7
NF5020-Insertion-7
[»] chr3 (7 HSPs)
chr3 (8-330)||(52836313-52836633)
chr3 (561-875)||(6010293-6010607)
chr3 (652-875)||(17782502-17782725)
chr3 (652-875)||(19091129-19091352)
chr3 (329-477)||(52836968-52837118)
chr3 (561-606)||(17782459-17782504)
chr3 (561-606)||(19091086-19091131)
[»] chr8 (2 HSPs)
chr8 (561-859)||(14501289-14501587)
chr8 (562-859)||(15994694-15994992)
[»] chr5 (2 HSPs)
chr5 (561-859)||(22287945-22288243)
chr5 (691-721)||(28242705-28242735)


Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 8 - 330
Target Start/End: Original strand, 52836313 - 52836633
Alignment:
Q  8 ggacgttcgtgaaattgagattgatgcaatgcgagagaaaacaaagccgccgctgcgtatctttgagcaggtgataagatcgaggaggttacctccatta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52836313 ggacgttcgtgaaattgagattgatgcaatgcgagagaaaacaaagccgccgctgcgtatctttgagcaggtgataagatcgaggaggttacctccatta 52836412  T
Q  108 ctcaattcgatt-cagcgcagattcgaaaccgaatatccaggnnnnnnnnnnnnnnaggtgtgagatcgaaatgaaaaatggagcttctggatattactt 206  Q
    |||||||||||| |||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||    
T  52836413 ctcaattcgatttcagcgcagattcgaaaccgaatatccaggtttttttttt----aggtgtgagatcgaaatgaaaaatggagcttctggatattactt 52836508  T
Q  207 gttcaaactcaacttcaaaatcgcaacgggtttgacgaaaacggttgtttccctcgcacaagcgggaaacacgtgttgcttatcgtgacttcagcacgcg 306  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52836509 gttcaaactcaactttaaattcgcaacgggtttgacgaaaacggttgtttccctcgcacaagcgggaaacacgtgttgctcatcgtgacttcagcacgcg 52836608  T
Q  307 cc-acaccaaagctcttcggttatt 330  Q
    || |||||||||||| |||||||||    
T  52836609 ccaacaccaaagctcgtcggttatt 52836633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 561 - 875
Target Start/End: Complemental strand, 6010607 - 6010293
Alignment:
Q  561 tccaccgaatcccttgttctgttcggcgatttggactccaagatcaatttgtattatcgttcaacctactcattattcatgtggcgttgattcatatgtt 660  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  6010607 tccaccgtatcccttgttctgttcggcgatttggactccaagatcaatttgtattatcattcaacctactcattattcatgtggcgttgcttcatatgtt 6010508  T
Q  661 aatatggggttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctcaatcttgccatagggattccaattgaattaag 760  Q
    |||||||| ||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||  |||||||||||||||||    
T  6010507 aatatggg-ttaaatctctccatggattgttttccccttcacatataatattctttgtgcatcttctccatcttgccacagtaattccaattgaattaag 6010409  T
Q  761 aatttagtacttttatatcaaaaagtaggatacttccgttggaattca-gaatttgatct-ttttggtagagcgtgtattttatgattgctttctctcct 858  Q
    ||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||||||||| |||||||||| | |||||||||||||||| |||||||||    
T  6010408 aatttagtacttttatatcaaaaagtaggatacatcctttg-aattcaagaatttgatcttttttggtagaacatgtattttatgattgccttctctcct 6010310  T
Q  859 aagggtaatagcgtcgc 875  Q
    | || || |||||||||    
T  6010309 agggttagtagcgtcgc 6010293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 652 - 875
Target Start/End: Original strand, 17782502 - 17782725
Alignment:
Q  652 tcatatgttaatatggggttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctcaatcttgccatagggattccaat 751  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||  ||||||||    
T  17782502 tcatatgttaatatggg-ttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctccatcttgccacagtaattccaat 17782600  T
Q  752 tgaattaagaatttagtacttttatatcaaaaagtaggatacttccgttggaattc-agaatttgatctttttggtagagcgtgta-ttttatgattgct 849  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| || || ||| | |||||||||||||||||||| |||||| ||||||||||||     
T  17782601 tgaattaggaatttagtacttttatatcaaaaagtaggatacatcc-tttgatttcaataatttgatctttttggtagaacgtgtatttttatgattgcc 17782699  T
Q  850 ttctctcctaagggtaatagcgtcgc 875  Q
    |||||||||| || || |||||||||    
T  17782700 ttctctcctagggttagtagcgtcgc 17782725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 652 - 875
Target Start/End: Original strand, 19091129 - 19091352
Alignment:
Q  652 tcatatgttaatatggggttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctcaatcttgccatagggattccaat 751  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||  ||||||||    
T  19091129 tcatatgttaatatggg-ttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctccatcttgccacagtaattccaat 19091227  T
Q  752 tgaattaagaatttagtacttttatatcaaaaagtaggatacttccgttggaattc-agaatttgatctttttggtagagcgtgta-ttttatgattgct 849  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| || || ||| | |||||||||||||||||||| |||||| ||||||||||||     
T  19091228 tgaattaggaatttagtacttttatatcaaaaagtaggatacatcc-tttgatttcaataatttgatctttttggtagaacgtgtatttttatgattgcc 19091326  T
Q  850 ttctctcctaagggtaatagcgtcgc 875  Q
    |||||||||| || || |||||||||    
T  19091327 ttctctcctagggttagtagcgtcgc 19091352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 329 - 477
Target Start/End: Original strand, 52836968 - 52837118
Alignment:
Q  329 tttatttgttacaacttgattagtctt-agggtatgtcatagctttgatgagtttttgaaattcgactcacttaataaaa-ataataatcgaagtttcaa 426  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  52836968 tttatttgttacaacttgattagtcttgagggtatgtcttagctttgatgagtttttgaaattcgactcacttaataaaaaataataatcgaagtttcaa 52837067  T
Q  427 tgtgaattatacttatattttaagtcggaattttaagatatttgacaccga 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52837068 tgtgaattatacttatattttaagtcggaattttaagatatttgacaccga 52837118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 17782459 - 17782504
Alignment:
Q  561 tccaccgaatcccttgttctgttcggcgatttggactccaagatca 606  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  17782459 tccaccgtatcccttgttctgttcggcgatttggactccaagatca 17782504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 19091086 - 19091131
Alignment:
Q  561 tccaccgaatcccttgttctgttcggcgatttggactccaagatca 606  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||    
T  19091086 tccaccgtatcccttgttctgttcggcgatttggactccaagatca 19091131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 561 - 859
Target Start/End: Original strand, 14501289 - 14501587
Alignment:
Q  561 tccaccgaatcccttgttctgttcggcgatttggactccaagatcaatttgtattatcgttcaacctactcattattcatgtggcgttgattcatatgtt 660  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  14501289 tccaccgtatcccttgttttgttcggcgatttggactccaagatcaatttgtcttatcattcaacctactcattattcatgtggcgttgcttcatatgtt 14501388  T
Q  661 aatatggggttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctcaatcttgccatagggattccaattgaattaag 760  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||| |    
T  14501389 aatatggg-ttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctccatcttgccatagtaattccaattgaattagg 14501487  T
Q  761 aatttagtacttttatatcaaaaagtaggatacttccgttggaattc-agaatttgatctttttggtagagcgtgta-ttttatgattgctttctctcct 858  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||    
T  14501488 aatttagtacttttatatcaaaaagtaggatacatcc-tttgaattcaagaatttgatctttttggtagaacgtgtatttttatgattgccttctctcct 14501586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 562 - 859
Target Start/End: Complemental strand, 15994992 - 15994694
Alignment:
Q  562 ccaccgaatcccttgttctgttcggcgatttggactccaagatcaatttgtatt-atcgttcaacctactcattattcatgtggcgttgattcatatgtt 660  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||    
T  15994992 ccaccgtatcccttgttctgttcggcaatttggactccaagatcaatttgtatttatcattcaacctactcattattcatgtggcgttgcttcatatgtt 15994893  T
Q  661 aatatggggttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctcaatcttgccatagggattccaattgaattaag 760  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||| |    
T  15994892 aatatggg-ttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctccatcttgccatagtaattccaattgaattagg 15994794  T
Q  761 aatttagtacttttatatcaaaaagtaggatacttccgttggaattca-gaatttgatctttttggtagagcgtgta-ttttatgattgctttctctcct 858  Q
    ||||||||||||||||||||||| ||||||||| ||| ||| |||||| |||||| |||||||||||||| |||||| |||||||||||| |||||||||    
T  15994793 aatttagtacttttatatcaaaatgtaggatacatcctttg-aattcaagaattttatctttttggtagaacgtgtatttttatgattgccttctctcct 15994695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 561 - 859
Target Start/End: Original strand, 22287945 - 22288243
Alignment:
Q  561 tccaccgaatcccttgttctgttcggcgatttggactccaagatcaatttgtattatcgttcaacctactcattattcatgtggcgttgattcatatgtt 660  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||    
T  22287945 tccaccgtatcccttgttttgttcggcgatttggactccaagatcaatttgtcttatcattcaacctactcattattcatgtggcgttgcttcatatgtt 22288044  T
Q  661 aatatggggttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctcaatcttgccatagggattccaattgaattaag 760  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||  ||||||||||||||| |    
T  22288045 aatatggg-ttagatctctccatcgattgttttccccttcacatatagtattctttgtgcatcttctccatcttgccacagtaattccaattgaattagg 22288143  T
Q  761 aatttagtacttttatatcaaaaagtaggatacttccgttggaattc-agaatttgatctttttggtagagcgtgta-ttttatgattgctttctctcct 858  Q
    ||||||||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||    
T  22288144 aatttagtacttttatatcaaaaagtaggatacatcc-tttgaattcaagaatttgatctttttggtagaacgtgtatttttatgattgccttctctcct 22288242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 691 - 721
Target Start/End: Original strand, 28242705 - 28242735
Alignment:
Q  691 tttccccttcacatatagtattctttgtgca 721  Q
    |||||||||||||||||||||||||||||||    
T  28242705 tttccccttcacatatagtattctttgtgca 28242735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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