View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5020-Insertion-8 (Length: 683)

Name: NF5020-Insertion-8
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5020-Insertion-8
NF5020-Insertion-8
[»] chr6 (1 HSPs)
chr6 (8-683)||(21144747-21145423)


Alignment Details
Target: chr6 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 8 - 683
Target Start/End: Complemental strand, 21145423 - 21144747
Alignment:
Q  8 ataactcaccataaccacaacctcaatctcttccctcgtaaatggcaccaccaatagagtattttggtcctccgaaatcctttgaaaagatactccatcc 107  Q
    ||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21145423 ataactctccatgtccacaacctcaatctcttccctcgtaaatggcaccaccaatagagcattttggtcctccgaaatcctttgaaaagatactccatcc 21145324  T
Q  108 aatctcagccggtcacctccctcctctattacttggtctctaaaataattcaccaccaccctcctcacctccatcggggtttgggcccactccccattaa 207  Q
    ||||||||||||||||||||||||||  ||||||||| ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  21145323 aatctcagccggtcacctccctcctccgttacttggtttctaaaatatttcaccaccactctcctcacctccatcagggtttgggcccactccccattaa 21145224  T
Q  208 ccttcaagg-tcttaaacaatttccacctcgtcttgccttcatacaattatggaaaaagttggtgttagaatccccttttttaagccacttgatacgaga 306  Q
    ||||||| | ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21145223 ccttcaaagctcttaaacaatttccacttcatcttgccttcatacaattatggaaaaagttggtgttagaatccccttctttaagccacttgatacgaga 21145124  T
Q  307 tctttgcaccaccaatgaatcttttgctttaagaagactccataaagcacaaattttttcttttcagactcggacatcttcatcgctcagcaacgacaac 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||  ||| ||||||||||    
T  21145123 tctttgcaccaccaatgaatcttttgctttaagaagactccataaagcacaaaaattttcttttcggactcggacatcttcatcattcaacaacgacaac 21145024  T
Q  407 tctccccttaaatccacctcttgtacaccttcttttaacctagaaattctctcttacatcgaaccatgctcctccttgttccactctctaagccttcctt 506  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21145023 tctccccttaaatccacctcttgtatatcttcttttaacctagaaattctctcttacatcgaaccatactcctccttgttccactctctaagccttcctt 21144924  T
Q  507 taaccccttttagtttctcttttaacacaaatcccatccatcacgttaaatgttgtgaattccacacctcctcaaccacctctttgatttgcctattatc 606  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21144923 taaccccttttagtttctcttttaacagaaatcccatccatcacgttaaatgttgtgaattccacacctcctcaaccacctctttgatttgcctattatc 21144824  T
Q  607 caaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatccaagaa 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21144823 caaccaatagtgtagattttgattctagccacatccaatatcctccttaaaattgtatcctcatcaaaatccaagaa 21144747  T

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