View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020-Insertion-9 (Length: 661)
Name: NF5020-Insertion-9
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 8 - 661
Target Start/End: Original strand, 8000000 - 8000652
Alignment:
| Q |
8 |
gattgttcactaggtgtcagctcaatggaaaaagtttgactttgtaacctcaaggaaggatttcaaatcccataaggtaattaataacaatttccacttc |
107 |
Q |
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| T |
8000000 |
gattgttcactaggtgtcagctcaatggaaaaagtttgactttgtaacctcaaggacggatttcaaatcccataaggtaattaataacaatttccacttc |
8000099 |
T |
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| Q |
108 |
cccgggttnnnnnnnnntcatttaagatggatctaattgaaaagaaagaaacattaaatagcatggaacaatgtagaagatgatcaactattataatccg |
207 |
Q |
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| T |
8000100 |
cccgggttaaaaaaaa-tcatttaagatggatcttattgaaaagaaagaaacattaaatagcatggaacaatgtagaagatgatcaactattataatccg |
8000198 |
T |
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| Q |
208 |
gacattgttcatataaaagtttgaattatgagagctctgtactgttccttggtaggaaattgcaaaaaatgatggagttattaccgtaagatacatagga |
307 |
Q |
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| T |
8000199 |
gacattgttcatataaaagtctgaattatgagagctctgtactgttccttggtaggaaattgcaaaaaatgatggagttattaccgtaagatacatagga |
8000298 |
T |
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| Q |
308 |
ggatcatccatggaagtagtgcctaggattacttctctttttagttttgttgtcagtttatgacaaacacgtagctgaaaataaaagtaataatatcata |
407 |
Q |
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| T |
8000299 |
ggatcatccatggaagtagtgcctaggattacttctctttttagttttgttgtcagtttatgacaaacacgtagctgaaaataaaagtaataatatcata |
8000398 |
T |
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| Q |
408 |
agatgggactacaattgcaacatcccgaatatggatgcagaagttctttatcaaattttacctcagatcgagtagccccgccaataataaacacaaagat |
507 |
Q |
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| T |
8000399 |
agatgggattacaaatgcaacatcccgaatatggatgcagaagttctttatcaaattttacctcagatcgagtagccccgccaataataaacacaaagat |
8000498 |
T |
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| Q |
508 |
ccgctttcccatcttcttgaaatcagcagccacgttctttaacgtggagtcactaaagaagattggaaaagctataagttcagggctaaagctgtatccg |
607 |
Q |
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| T |
8000499 |
ccgctttcccatcttcttgaaatcagcagccacgttctttaacgtggagtcactaaagaagattggaaaagctataagttcagggctaaagctgtatccg |
8000598 |
T |
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| Q |
608 |
tttgaaagcatatttcatttatgttaaagaagcaaatttgtgtttaggtaatag |
661 |
Q |
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| T |
8000599 |
tttgaaagcatatttcatttatgttaaagaagcaaatttgtgtttaggtaatag |
8000652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 81
Target Start/End: Complemental strand, 15804416 - 15804374
Alignment:
| Q |
40 |
agtttgactttgtaacctcaagg-aaggatttcaaatcccata |
81 |
Q |
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| T |
15804416 |
agtttgaccttgtaacctcaagggaaggatttcaaatcccata |
15804374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 15360915 - 15360947
Alignment:
| Q |
25 |
cagctcaatggaaaaagtttgactttgtaacct |
57 |
Q |
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| T |
15360915 |
cagctcaatggtaaaagtttgactttgtaacct |
15360947 |
T |
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