View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020_high_14 (Length: 236)
Name: NF5020_high_14
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 5831431 - 5831620
Alignment:
| Q |
20 |
tcacttccacgatggcaaaaagcgcaagggaacttttctatagcactccatgtttgcagtataaaataatatataccaattaggaaggggacaaaacatc |
119 |
Q |
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| T |
5831431 |
tcacttccacgatggcaaaaagcgcaagggaacttttc-----------atgtttgcagtataaaataatatataccaattaggaaggggacaaaacatc |
5831519 |
T |
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| Q |
120 |
acatattcacctattggtggagagggtcatatttgattcctctattgtaactcacatcacattgaaagtaagtcttgtattacatgggttttgtaattca |
219 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5831520 |
acatattcacctattggtggagagggtcgtatttgattcctctattgtaactcacatcacattgaaagtaagtcttgtattacatgggttttgtaactca |
5831619 |
T |
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