View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020_high_2 (Length: 426)
Name: NF5020_high_2
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Original strand, 41740336 - 41740736
Alignment:
| Q |
18 |
gataccacttctgaaccctatccctaatcttctgcaacaacctagcactcaaactcctctctttcctcatcatatccataatctccaaatgaaccgtatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41740336 |
gataccacttctgaaccctatccctaatcttctgcaacaacctagcactcaaactcctctctttcctcatcatatccataatctccaaatgaaccgtatt |
41740435 |
T |
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| Q |
118 |
tggcaaaatacacggcctcgccttctccatcctcctcttatactccctctcctgactcaaatactgtttcatcctctccttctcagtcatatcagaatcc |
217 |
Q |
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| T |
41740436 |
tggcaaaatacacggcctcgccttctccatcctcctcttatactccctctcctgactcaaatactgtttcatcctctccttctcagtcatatcagaatcc |
41740535 |
T |
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| Q |
218 |
aactcaatcggctttgtctgcggcatcataccaacattcatacaacgaaacttctcggcagcctcccaagtactctcactatacgaaaccgtgattccaa |
317 |
Q |
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| T |
41740536 |
aactcaatcggctttgtctgcggcatcataccaacattcatacaacgaaacttctcggcagcctcccaagtactctcactatacgaaaccgtgattccaa |
41740635 |
T |
|
| Q |
318 |
cagttccatcagcatttgtcttcccttcaagatcaaccttttcaaacattccacttgatgttaaaccatccaattccttctgtaattgggccctagtata |
417 |
Q |
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| T |
41740636 |
cagttccatcagcatttgtcttcccttcaagatcaaccttttcaaacattccacttgatgttaaaccatccaactccttctgtaattgggccctagtata |
41740735 |
T |
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| Q |
418 |
a |
418 |
Q |
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| T |
41740736 |
a |
41740736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 24171198 - 24171246
Alignment:
| Q |
18 |
gataccacttctgaaccctatccctaatcttctgcaacaacctagcact |
66 |
Q |
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| T |
24171198 |
gataccatttctgaaccctatccctaatcttctgcaacaacctagcact |
24171246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 371
Target Start/End: Original strand, 24171500 - 24171551
Alignment:
| Q |
320 |
gttccatcagcatttgtcttcccttcaagatcaaccttttcaaacattccac |
371 |
Q |
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|||||||||||||| || |||||||| | ||||||||| ||||||||||||| |
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| T |
24171500 |
gttccatcagcattggttttcccttccatatcaaccttctcaaacattccac |
24171551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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