View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020_high_3 (Length: 418)
Name: NF5020_high_3
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 30810557 - 30810942
Alignment:
| Q |
18 |
atacataattctagcaatcatcagaatttggatagtgctggggtttctgttcattttcaggagattgttgatttggtaccttttcttatttactctgctt |
117 |
Q |
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| T |
30810557 |
atacataattctagcaatcatcagaatttggatagtgctggggtttctgttcattttcaggagattgttgatttggtaccttttcttatttactctgctt |
30810656 |
T |
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| Q |
118 |
tgttggtgctatttagatttttattgttatctttgttgaagatgagatataaattgggcaagcaataaattctttaaatttgacttccaatatatatata |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
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| T |
30810657 |
tgttggtgctatttagatttttattgttatctttgttgaagatgagatataaattgggcaagcaataaattctttaaatttgacttccaatatttttttt |
30810756 |
T |
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| Q |
218 |
tannnnnnnngtgaagaacgaaaagattgtagatannnnnnnnngttttcaatttcatttgatatattatcactatagtctgcgttgttatgatatagtg |
317 |
Q |
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| T |
30810757 |
t---ttttttgtgaagaacgaaaagattgtagatatttttttttgttttcaatttcatttgatatattatcactatagtctgcgttgttatgatatagtg |
30810853 |
T |
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| Q |
318 |
gtttggctgtgaggatattttatgtgtgtgcctgggttcgatccagggtctccacatttcccctctcctgtgtatgtttatttgagtat |
406 |
Q |
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| T |
30810854 |
gtttggctgtgaggatattttatgtgtgtgcctgggttcgatccagggtctccacatttcccctctcctgtgtatgtttatttgagtat |
30810942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 406
Target Start/End: Original strand, 8575752 - 8575844
Alignment:
| Q |
316 |
tggtttggctgtgaggatattttatgtgtgtgcctgggttcgatccagggtctccaca-tttcccctctcc-tgtgtatgtttatttgagtat |
406 |
Q |
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| T |
8575752 |
tggtttggctgtgaggatattttatatggaatcccgggttcaaacccgggtctccacactttcccctctccatgtgtgtgcttattcgagtat |
8575844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 36130450 - 36130539
Alignment:
| Q |
18 |
atacataattctagcaatcatcagaatttggatagtgctggggtttctgttcattttcaggagattgttgatttggtaccttttcttatt |
107 |
Q |
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||||| ||||||| | |||| || |||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
36130450 |
atacacaattctaccgatcaccacaatttggatagtgctgaggtttctgtttattttcaggagattcttgatttggtaccttttcttatt |
36130539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 16807930 - 16807972
Alignment:
| Q |
300 |
cgttgttatgatatagtggtttggctgtgaggatattttatgt |
342 |
Q |
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| T |
16807930 |
cgttgttataacatagtggtttggctgtgaggacattttatgt |
16807972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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