View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5020_low_1 (Length: 670)
Name: NF5020_low_1
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 239 - 657
Target Start/End: Original strand, 48395132 - 48395550
Alignment:
| Q |
239 |
acaatgtaaaactttttacgttgctgcagttaaagtcttttatataattcaacttatcttttcgatctgcgtctctcttcactttaacaggtaccagttg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48395132 |
acaatgtaaaactttttacgttgctgcagttaaagtcttttatataattcaacttatcttttcgatctgcgtctctcttcactttaacaggtaccagttg |
48395231 |
T |
|
| Q |
339 |
cgtataataacaaggttcgagaattggagagtcaaggtttagaggaagacatactcaacaagaaattggaacttctcagagttagtatatatgcatgatt |
438 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48395232 |
cgtataataacaaggttcgagaattggagagtcaaggtttagaggaagacatactcaacaagaaattggaacttctcagagttagtatatatgcatgatt |
48395331 |
T |
|
| Q |
439 |
taaatttttgtgtttgcattattattataggtgagacttgagaggtgctgatttggttaaccttaattgtatataggaatcatacactatcatgtcatcg |
538 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
48395332 |
taaatttttgtgtttgcattattattataggtgagacttgagaggtgatgatttggttaaccttaactgtatataggaatcatacactatcatgtcatcg |
48395431 |
T |
|
| Q |
539 |
ccggatgaaagaagaatgtatgactggagcttgtccagagaagataacacagaaacatacatttggccatttgaggtagatgtttcagtacttcaagaag |
638 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48395432 |
ccggatgaaagaagaatgtatgactggagcttgtccagagaagataacacagaaacatacatttggccatttgaggttgatgtttcagtacttcaagaag |
48395531 |
T |
|
| Q |
639 |
gagatcctccaccacaggt |
657 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
48395532 |
gagatcctccaccacaggt |
48395550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 48394939 - 48395130
Alignment:
| Q |
19 |
aattgaattgatgaagatatggtttagaatgcagctattacggatgcagatcattatggtagacttggcttaccaaaaggatgtccatatgacatggtca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48394939 |
aattgaattgatgaagatatggtttagaatgcagctattacagatgcagatcattatggtagacttggcttaccaaaaggatgtccatatgacatggtca |
48395038 |
T |
|
| Q |
119 |
gaaacattttatatcggatttaattcatatataccttcgtctatgatgaaaagatttttatttcgtcaatcaatcatattcatcaaacatcg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
48395039 |
gaaacattttatatcggatttaattcatatataccttcgtcgatgatgaaaagatttttataccgtcaatcaatcatactcatcaaacatcg |
48395130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 53
Target Start/End: Original strand, 48414116 - 48414145
Alignment:
| Q |
24 |
aattgatgaagatatggtttagaatgcagc |
53 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
48414116 |
aattgatgaagatatggtttagaatgcagc |
48414145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University