View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020_low_11 (Length: 244)
Name: NF5020_low_11
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_low_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 244
Target Start/End: Original strand, 23893489 - 23893715
Alignment:
| Q |
18 |
atatttgtaaaaatattttaagaattaacctataaaagaagtgtaattgtgtgatttaattgaatttatagt---nnnnnnnttacaccatcaattaatc |
114 |
Q |
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| T |
23893489 |
atatttgtaaaaatattttaagaattaacctataaaagaagtgtaattgtgtgatttaattgaattcatagtaaaaaaaaaattacaccatcaattaatc |
23893588 |
T |
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| Q |
115 |
acattcgttgtacgcatataaagtgtcaaacatgattgattgtggtaaaatgacatcataannnnnnnnnnnnnnaatattgccggtgcataaaaaatta |
214 |
Q |
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| T |
23893589 |
acattcgttgtacgcatataaagtgtc---catgatcgattgtggtaaaatgacatcataattttttatttttttaatattggcggtgcattaaaaatta |
23893685 |
T |
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| Q |
215 |
aacactaaattatccttaaaattttgttgt |
244 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23893686 |
aacactaaattatccttaaaattttgttgt |
23893715 |
T |
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