View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5020_low_12 (Length: 238)

Name: NF5020_low_12
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5020_low_12
NF5020_low_12
[»] chr2 (1 HSPs)
chr2 (1-221)||(33637536-33637756)
[»] scaffold0267 (1 HSPs)
scaffold0267 (12-111)||(13366-13465)
[»] chr3 (1 HSPs)
chr3 (12-107)||(3837885-3837980)
[»] chr7 (2 HSPs)
chr7 (26-107)||(20475969-20476050)
chr7 (30-82)||(15571919-15571971)
[»] scaffold0128 (1 HSPs)
scaffold0128 (8-108)||(34021-34121)
[»] chr4 (3 HSPs)
chr4 (8-108)||(13784358-13784458)
chr4 (39-83)||(10553569-10553613)
chr4 (39-83)||(10571299-10571343)
[»] chr8 (3 HSPs)
chr8 (8-101)||(40794177-40794270)
chr8 (13-104)||(29124882-29124973)
chr8 (36-87)||(29126468-29126519)


Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33637756 - 33637536
Alignment:
Q  1 tcgtttgtgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgtt 100  Q
    |||| ||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637756 tcgtctgtgcctttattatgtccacatgagaacccatcttgttttgtgagaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgtt 33637657  T
Q  101 agctatgttcaattgggtatttctatgaatctcaatttagttgattggttgtttccggtttgtctctctgaaaatggaaatgtcatgttgatggctagca 200  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33637656 agctatgttcaattgggtatttgtgtgaatctcaatttagttgattggttgtttccggtttgtctctctgaaaatggaaatgtcatgttgctggctagca 33637557  T
Q  201 aaggagcttttgatgatatta 221  Q
    |||||||||||||||||||||    
T  33637556 aaggagcttttgatgatatta 33637536  T

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Target: scaffold0267 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 111
Target Start/End: Original strand, 13366 - 13465
Alignment:
Q  12 tttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatgttca 111  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  13366 tttattataaccacatgagaacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggactcagttggtgaatgttagctatgttca 13465  T

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Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 12 - 107
Target Start/End: Original strand, 3837885 - 3837980
Alignment:
Q  12 tttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 107  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||    
T  3837885 tttattataaccacatgagaacccattttgttttgtgggaaatgaaagagtttggagttcaagagtcttggactcagttggtgaatgttagctatg 3837980  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 20476050 - 20475969
Alignment:
Q  26 atgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 107  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  20476050 atgagaacccattttgttttgtgggaaatgagagagtttggggttcaagagtcttggactcggttggtgaatgttagctatg 20475969  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 15571971 - 15571919
Alignment:
Q  30 gaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttgg 82  Q
    ||||| |||||||  ||||| ||||||| |||||||||||| |||||||||||    
T  15571971 gaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgg 15571919  T

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Target: scaffold0128 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 34121 - 34021
Alignment:
Q  8 tgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 107  Q
    |||||||||||||  || ||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| || ||||    
T  34121 tgcctttattatgatcatatgagaacacattttgttttgtgggaaatgagagagtatggagttcaagaatcttggactcggttggtgaatgtcagttatg 34022  T
Q  108 t 108  Q
    |    
T  34021 t 34021  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 13784458 - 13784358
Alignment:
Q  8 tgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 107  Q
    |||||||||||||  || ||||||||  ||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| || ||||    
T  13784458 tgcctttattatgatcaaatgagaacacattttgttttgtgggaaatgagagagtatggagttcaagaatcttggactcggttggtgaatgtcagttatg 13784359  T
Q  108 t 108  Q
    |    
T  13784358 t 13784358  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 10553613 - 10553569
Alignment:
Q  39 ttgttttgtgggaaatgagagagtttggagttcaagagtcttgga 83  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||||    
T  10553613 ttgttttatggaaaatgacagattttggagttcaagagtcttgga 10553569  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 10571343 - 10571299
Alignment:
Q  39 ttgttttgtgggaaatgagagagtttggagttcaagagtcttgga 83  Q
    ||||||| ||| |||||| ||| ||||||||||||||||||||||    
T  10571343 ttgttttatggaaaatgacagattttggagttcaagagtcttgga 10571299  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 8 - 101
Target Start/End: Complemental strand, 40794270 - 40794177
Alignment:
Q  8 tgcctttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgtta 101  Q
    |||||||||||||   ||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| || ||||||    
T  40794270 tgcctttattatgattacatgagaacacattttgttttgtgggaaatgagagagtttggagttcaagaatcttggactcggttgatggatgtta 40794177  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 104
Target Start/End: Original strand, 29124882 - 29124973
Alignment:
Q  13 ttattatgtccacatgagaacctattttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcgattggtgaatgttagct 104  Q
    |||||||| ||| ||||||||| ||||   |||||||| ||||||||||||||||||||||||||||||||| |  ||||||||| ||||||    
T  29124882 ttattatgaccagatgagaacccatttcactttgtggggaatgagagagtttggagttcaagagtcttggacccacttggtgaatattagct 29124973  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 29126468 - 29126519
Alignment:
Q  36 attttgttttgtgggaaatgagagagtttggagttcaagagtcttggactcg 87  Q
    ||||| ||||| | ||||||||||||||||||||| ||||||||||||||||    
T  29126468 attttattttgggtgaaatgagagagtttggagtttaagagtcttggactcg 29126519  T

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