View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020_low_13 (Length: 237)
Name: NF5020_low_13
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 96 - 215
Target Start/End: Original strand, 33118617 - 33118736
Alignment:
| Q |
96 |
attttaaaattttgtaaatcgatgttattatgcatattatggaattgatccctcaactttttaaaaatgaagagaataaaattctaatttcctcagaatt |
195 |
Q |
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| T |
33118617 |
attttaaaattttgcaaatcgatgttattatgcatattatggaattgatccctcaactttttaaaaatgaagagaataaaattctaatttcctcagaatt |
33118716 |
T |
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| Q |
196 |
tccaatgattccgtcaaatt |
215 |
Q |
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| T |
33118717 |
tccaatgattccgtcaaatt |
33118736 |
T |
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Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 33118557 - 33118628
Alignment:
| Q |
7 |
tagtttttacattatatatgcacattttcccaccaaaatatgtatatcaccacataacaaattttcaaattt |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33118557 |
tagtttttacattatatatgcacattttcccaccaaaatatgtatatcaccacataacaaattttaaaattt |
33118628 |
T |
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