View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020_low_4 (Length: 350)
Name: NF5020_low_4
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 15 - 335
Target Start/End: Complemental strand, 28675950 - 28675630
Alignment:
| Q |
15 |
caaaggcatcatgaagctatctgcaaaacctatttctagtccaggtagaatggaaaagtttccaccaccattgatgagattcttaaaatcaaatgcagca |
114 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28675950 |
caaaggcatcatgaagctatctgcaaaacccatttctagtccaggtagaatggaaaagtttccaccaccattgatgagattcttaaaatcaaatgcagca |
28675851 |
T |
|
| Q |
115 |
aacaaaagcagaggaagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttccc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28675850 |
aacaaaagcagaggaagaacaagatcaaagtctaactctatgttcttaatcctaaggaaaaagaacactacttccattgaaaccaaagaaccttcttccc |
28675751 |
T |
|
| Q |
215 |
ctaaagtcacttgcatgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28675750 |
ctaaagtcacttgcatgggtcaagttcgagttaaacgctcctccaaacaacccaccactaaaaagggtcgtccctcctccggtgacggagctccgagtaa |
28675651 |
T |
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| Q |
315 |
atgccgctgccgtttttggtg |
335 |
Q |
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||||||||||| ||||||||| |
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| T |
28675650 |
atgccgctgccctttttggtg |
28675630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 40638109 - 40638148
Alignment:
| Q |
200 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
40638109 |
aagaaccttcttcccctaaagtcacttgcatgggtcaagt |
40638148 |
T |
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