View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5020_low_8 (Length: 264)
Name: NF5020_low_8
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_low_8 |
 | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
| [»] scaffold0128 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 262
Target Start/End: Original strand, 33637794 - 33638054
Alignment:
| Q |
2 |
caacaaaaccatcagttaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttata |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33637794 |
caacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttata |
33637893 |
T |
|
| Q |
102 |
catatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33637894 |
catatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacgaattgtccaacgagagtgcctccaagtagaattggaaaatcagggcaa |
33637993 |
T |
|
| Q |
202 |
gcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcccatttctgtg |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33637994 |
gcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcccatttctgtg |
33638054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 4e-56; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 29124791 - 29124533
Alignment:
| Q |
1 |
tcaacaaaaccatcagttaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttat |
100 |
Q |
| |
|
|||| |||||||| || |||| |||||||||||| ||||||| ||||||||||| |||||||| | ||| || | || ||||||||||| ||| || |
|
|
| T |
29124791 |
tcaataaaaccattagacaacaacatatacttacatgcctccagccgcatatcaagtgataaaattattaactgatcgacaataacatttttcaattcat |
29124692 |
T |
|
| Q |
101 |
acatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggca |
200 |
Q |
| |
|
|||||||||||||| | | |||||||||||| | |||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
29124691 |
tcatatgacaatttaagctatgacgtgctaactagttaatactaccattcacgaatggtccaacaagagtgccttttggtagaattggaaaatcagggca |
29124592 |
T |
|
| Q |
201 |
agcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcccatttct |
259 |
Q |
| |
|
||||| |||||||||||||||||| || |||||||||||||| ||||| |||||||||| |
|
|
| T |
29124591 |
agcaagagtctttctccaacaactttcacccatgcaatgaactctcccttcccatttct |
29124533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 226
Target Start/End: Complemental strand, 31669618 - 31669440
Alignment:
| Q |
48 |
catatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacca |
147 |
Q |
| |
|
|||||||| ||||||||| ||||| |||| || | ||||||||| ||| || |||||| |||||| | | ||| |||||||| | |||| ||||||| |
|
|
| T |
31669618 |
catatcaagcgataaaattactaagtggtcgacgataacattttgaaattcattcatatggaaatttaagctatgatgtgctaacaagttaatactacca |
31669519 |
T |
|
| Q |
148 |
ttcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactat |
226 |
Q |
| |
|
|||||| |||||||||| | || | || |||| ||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
31669518 |
ttcacgaatggtccaacaaaagcgtcttttagtaaaattggaaaatcagggcaagcaaaagtctttctccaacatctat |
31669440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 146
Target Start/End: Original strand, 40794307 - 40794392
Alignment:
| Q |
61 |
aaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacc |
146 |
Q |
| |
|
|||| ||||||||| | |||||||||||||| ||||||||| || || |||| ||||||| |||||||| | ||||||||||| |
|
|
| T |
40794307 |
aaaaccactaattgttggatggtaacattttcccatttataatcattactgtttaagttgtgaagtgctaactagttaacactacc |
40794392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 3837810 - 3837593
Alignment:
| Q |
25 |
atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac |
124 |
Q |
| |
|
||||||||||| |||||| | |||| ||||| ||| ||||||| ||| ||||||||||||||||||| || || ||||| ||||||||||| ||| ||| |
|
|
| T |
3837810 |
atatacttacatgcctcctttcgcaaatcaagcgaaaaaatcaataactggttgatggtaacattttccctttcatacaaatgacaatttaagttatgat |
3837711 |
T |
|
| Q |
125 |
gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact |
224 |
Q |
| |
|
| |||||| |||||||||||||||||| |||||||||||| ||| | | |||| ||||||||||||| ||||||||| ||| ||||||||| |||| |
|
|
| T |
3837710 |
acgttaaccagttaacactaccattcacgaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaact |
3837611 |
T |
|
| Q |
225 |
atctcccatgcaatgaac |
242 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
3837610 |
atcgcccatgcaatgaac |
3837593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 242
Target Start/End: Complemental strand, 13291 - 13074
Alignment:
| Q |
25 |
atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac |
124 |
Q |
| |
|
||||||||||| | |||| | |||| ||||| ||| ||||||| ||| ||||| ||||||||||||| || || ||||| ||||||||||| ||| ||| |
|
|
| T |
13291 |
atatacttacatgtctcctttcgcaaatcaagcgaaaaaatcaataactggttaatggtaacattttccctttcatacaaatgacaatttaagttatgat |
13192 |
T |
|
| Q |
125 |
gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact |
224 |
Q |
| |
|
| |||||| |||||||||||||||| |||||||||||| ||| | | |||| ||||||||||||| ||||||||| ||| ||||||||| |||| |
|
|
| T |
13191 |
acgttaaccagttaacactaccattcagaaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaact |
13092 |
T |
|
| Q |
225 |
atctcccatgcaatgaac |
242 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
13091 |
atcgcccatgcaatgaac |
13074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 13784529 - 13784753
Alignment:
| Q |
25 |
atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac |
124 |
Q |
| |
|
||||||||||| |||| |||||| ||||| || |||| ||||||||| | ||| |||| ||||| ||||||||| || || |||| ||||||| |
|
|
| T |
13784529 |
atatacttacatttctccttccgcagatcaagtgaaaaaaccactaattgttggatagtaatattttcccatttataatcatcactgtttaagttgtgaa |
13784628 |
T |
|
| Q |
125 |
gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact |
224 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||| | ||| | | ||||||||||||||| ||||||| | |||||||||||||||||||| |
|
|
| T |
13784629 |
gtgctaaccagttaacactaccattcacgaatggtccattggaagttcgt---agtagaattggaaaagtagggcaatcgatagtctttctccaacaact |
13784725 |
T |
|
| Q |
225 |
atctcccatgcaatgaaccctcccctcc |
252 |
Q |
| |
|
||| ||||| |||||||| ||||||||| |
|
|
| T |
13784726 |
atcacccatacaatgaactctcccctcc |
13784753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 34192 - 34416
Alignment:
| Q |
25 |
atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac |
124 |
Q |
| |
|
||||||||||| | |||| |||||| ||||| || |||| ||||||||| | |||||||||||||| ||||||||| || || |||| ||||||| |
|
|
| T |
34192 |
atatacttacatgtctccttccgcagatcaagtgaaaaaaccactaattgttggatggtaacattttcccatttataatcatcactgtttaagttgtgaa |
34291 |
T |
|
| Q |
125 |
gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact |
224 |
Q |
| |
|
|||||||||| |||||||| ||||||||| |||||||| | | | || ||||||||||||||| ||||||| | | |||||||||||||||||| |
|
|
| T |
34292 |
gtgctaaccagttaacactgccattcacgaatggtccattggaaat---tcgtagtagaattggaaaagtagggcaatcgagagtctttctccaacaact |
34388 |
T |
|
| Q |
225 |
atctcccatgcaatgaaccctcccctcc |
252 |
Q |
| |
|
||| ||||| || ||||| ||||||||| |
|
|
| T |
34389 |
atcacccatacagtgaactctcccctcc |
34416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 81 - 252
Target Start/End: Original strand, 29236 - 29404
Alignment:
| Q |
81 |
ggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagt |
180 |
Q |
| |
|
||||||||||| ||||||||| ||| ||| |||| ||| ||| |||||||||| |||||||||||||||||| |||||||| | ||| || ||| |
|
|
| T |
29236 |
ggtaacattttcccatttataattatcacagtttacgttttgaagtgctaaccagttaacactaccattcacgaatggtccattgcaagt---tcgtagt |
29332 |
T |
|
| Q |
181 |
agaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccctcccctcc |
252 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||| | ||| |||||||| ||||||||| |
|
|
| T |
29333 |
agaattggaaaagtagggcaatcgggagtctttctccaacaactatcactcatacaatgaactctcccctcc |
29404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 20476292 - 20476358
Alignment:
| Q |
178 |
agtagaattggaaaatcagggcaagcaatagtctttctccaacaactatctcccatgcaatgaaccc |
244 |
Q |
| |
|
||||||||||||||| |||||| | ||| |||| ||||||||| |||| |||||||||||||||| |
|
|
| T |
20476292 |
agtagaattggaaaagtggggcaaactataatcttcctccaacaattatcacccatgcaatgaaccc |
20476358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University