View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020_low_9 (Length: 263)
Name: NF5020_low_9
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 8408436 - 8408191
Alignment:
| Q |
2 |
taattctgccatcctgcaaataagaaagctcaaccataagtagcaattcacatagagaagcacttattaaaggtcaatactcaatagtatagtatatgtg |
101 |
Q |
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| T |
8408436 |
taattctgccatcctgcaaataagaaagctcaaccataagtagcaattcacatagagaagcacttataaaaggtcaatactcaatagtatagtatatgtg |
8408337 |
T |
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| Q |
102 |
acatacattgtcggtgtcaacatcatcaatgacttcatctatagttgcttcatctcccatttgatattcagccaaagcttgtctaagttcctctcttgtt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8408336 |
acatacattgtcggtgtcaacatcatcaatgacttcatctatagttgcttcatctcccatttgatattcagccaaagcttgtctaagttcctctcttgtt |
8408237 |
T |
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| Q |
202 |
acataactgaacagtcacccaaacaaaacttaagataagcaagaat |
247 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8408236 |
acataactgaacagtcacccaaacaaaacttaaggtaagcaagaat |
8408191 |
T |
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