View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5021-Insertion-1 (Length: 986)
Name: NF5021-Insertion-1
Description: NF5021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5021-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-132; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 7 - 313
Target Start/End: Complemental strand, 1955543 - 1955238
Alignment:
| Q |
7 |
agtttaaacctttaatattgagtttattttaaatatgaaatctataaaaaa-cactacttatcacaagaggagaaaaccaggttgctaaccaaccccaaa |
105 |
Q |
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| T |
1955543 |
agtttaagcctttaatattgagtttattctgaatatgaaatctataaaaaaacactacttatcacaagaggagaaaaccaggttgctaaccaaccccaaa |
1955444 |
T |
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| Q |
106 |
gatgtttttcaggattttccatgggaggaacttgagcgatccagctcattaacaagcaccaaggaattggtacacctctcaccacaattttgttatctta |
205 |
Q |
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| T |
1955443 |
gatgtttt-cag-atttcccatgggaggaacttgagcgatccagctcgttaacaagcaccaaggaattggtacacctctcgccacaactttgttatctta |
1955346 |
T |
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| Q |
206 |
gcaataattttctcaagattacgattaacaaagaacaaagattttggttcgtcattgcgcatgctgaaatttctaacatgacatatacggagaatatata |
305 |
Q |
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| T |
1955345 |
gcaataattttctcaagattactattaacaagcaacaaagattttggttcgtcattgcgcatgctgaaatttctaacatgacatatacggggaatatata |
1955246 |
T |
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| Q |
306 |
aagtacaa |
313 |
Q |
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| T |
1955245 |
aagtacaa |
1955238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 3e-94
Query Start/End: Original strand, 629 - 820
Target Start/End: Complemental strand, 1954102 - 1953911
Alignment:
| Q |
629 |
tgtgaatccaagagagtgaccaatcaaataattaactatttttatgtttctcgtataatttcaaagtggtagattatgcaatttatagtttgtccataaa |
728 |
Q |
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| T |
1954102 |
tgtgaatccaagagagtgaccaatcaaataattaactatttttatgtttctcgtataatttcaaagtagtagatgatgcaatttatagtttgtccataaa |
1954003 |
T |
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| Q |
729 |
ataacagaatattacaaaaatgtacttaaactttttaataaaaaacgttagttatttgatagatgatatatacataatataaatgtgtctgg |
820 |
Q |
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| T |
1954002 |
ataacataatattacaaaaatgtacttaaactttttaataaaaaacgttagttatttgatagatgatatatacataatagaaatgtgtctgg |
1953911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 838 - 986
Target Start/End: Complemental strand, 1953919 - 1953772
Alignment:
| Q |
838 |
tgtgtctgggttaaaatttataatcactttgtattttttgcatatattatttattcgcacataacatctaacttatattattcattctcacacgacatgt |
937 |
Q |
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| T |
1953919 |
tgtgtctggagtaaaatttataatcactttgtattttttgcatatattatttattcgcacataacatctaacttatattattcattctcatacgacatgt |
1953820 |
T |
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| Q |
938 |
atgactcaaagagttgttattctacacataaagaacgagggagatgtgt |
986 |
Q |
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| T |
1953819 |
atgactcaaagagttg-tattctacacataaagaacgagggagatgtgt |
1953772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 442 - 586
Target Start/End: Complemental strand, 1954291 - 1954145
Alignment:
| Q |
442 |
ctcatttgtatattttataacattggttgttaatagttagaggggtcattannnnnnnnngcatttgtataagnnnnnnn--aataagccaaactaatgc |
539 |
Q |
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| T |
1954291 |
ctcatttgtatattttataacattggtcgttaatagttagagggatcattatttttttttgcatttgtataagtttttttttaataagccaaactaatgc |
1954192 |
T |
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| Q |
540 |
gtcaaaatttggcaccgaagataatccctacttatacacatttatgc |
586 |
Q |
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| T |
1954191 |
gtcaaaatttggcaccgaagataatcctttcttatacacatttatgc |
1954145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 312 - 372
Target Start/End: Complemental strand, 1954421 - 1954361
Alignment:
| Q |
312 |
aatataaagcctacatggaaactaacaagcaatcttgttatcgagttatttatgatggttc |
372 |
Q |
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| T |
1954421 |
aatataaagcctacatggaaactaacaagcaatcttgttatcgagttatttatgatggttc |
1954361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 669 - 747
Target Start/End: Original strand, 630012 - 630090
Alignment:
| Q |
669 |
tttatgtttctcgtataatttcaaagtggtagattatgcaatttatagtttgtccataaaataacagaatattacaaaa |
747 |
Q |
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| T |
630012 |
tttatgtttctcgtctaatttcaaagtggcaaatgatgtaatttataattttttcataaaataataaaacattacaaaa |
630090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 847 - 884
Target Start/End: Complemental strand, 55281595 - 55281558
Alignment:
| Q |
847 |
gttaaaatttataatcactttgtattttttgcatatat |
884 |
Q |
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| T |
55281595 |
gttaaaatttataatcactttgtatttcttgcatatat |
55281558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 669 - 747
Target Start/End: Original strand, 32260903 - 32260981
Alignment:
| Q |
669 |
tttatgtttctcgtataatttcaaagtggtagattatgcaatttatagtttgtccataaaataacagaatattacaaaa |
747 |
Q |
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|||||||||||||| ||||||| ||||||| |||||| |||| ||| ||| || ||||||||| |||| | ||||||| |
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| T |
32260903 |
tttatgtttctcgtctaatttctaagtggttaattatgtaattgataatttttcaataaaataatagaagactacaaaa |
32260981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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