View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5021-Insertion-13 (Length: 66)
Name: NF5021-Insertion-13
Description: NF5021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5021-Insertion-13 |
 | |
|
| [»] chr5 (8 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 59; Significance: 9e-26; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-26
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 9288932 - 9288874
Alignment:
| Q |
8 |
aaactcatttcaatattcatagcatcttgcagaataacacatgcagtatcattaataaa |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9288932 |
aaactcatttcaatattcatagcatcttgcagaataacacatgcagtatcattaataaa |
9288874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 9293453 - 9293395
Alignment:
| Q |
8 |
aaactcatttcaatattcatagcatcttgcagaataacacatgcagtatcattaataaa |
66 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
9293453 |
aaactcatttcaatattcatagcatctagcagaataacacatgcagtctcattaataaa |
9293395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-21
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 9373096 - 9373154
Alignment:
| Q |
8 |
aaactcatttcaatattcatagcatcttgcagaataacacatgcagtatcattaataaa |
66 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9373096 |
aaactcattttaatattcatggcatcttgcagaataacacatgcagtatcattaataaa |
9373154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 9298060 - 9298004
Alignment:
| Q |
8 |
aaactcatttcaatattcata-gcatcttgcagaataacacatgcagtatcattaata |
64 |
Q |
| |
|
|||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9298060 |
aaactcattttaatat-cataagcatcttgcagaataacacatgcagtatcattaata |
9298004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 66
Target Start/End: Complemental strand, 9305921 - 9305863
Alignment:
| Q |
8 |
aaactcatttcaatattcata-gcatcttgcagaataacacatgcagtatcattaataaa |
66 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
9305921 |
aaactcatttcaatat-cataagcatcttgcaaaatatcacatgcagtatcattaataaa |
9305863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 9352446 - 9352394
Alignment:
| Q |
8 |
aaactcatttcaatattcata-gcatcttgcagaataacacatgcagtatcatt |
60 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
9352446 |
aaactcatttcaatat-cataagcatcttgcagaatatcacatgcagtatcatt |
9352394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 9302297 - 9302245
Alignment:
| Q |
8 |
aaactcatttcaatattcata-gcatcttgcagaataacacatgcagtatcatt |
60 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
9302297 |
aaactcatttcaatat-cataagcatcttgcagaatatcacatgcaatatcatt |
9302245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 9348588 - 9348635
Alignment:
| Q |
14 |
atttcaatattcatagcatcttgcagaataacacatgcagtatcattaa |
62 |
Q |
| |
|
|||||||||| |||||||||||||||| || |||||||| ||||||||| |
|
|
| T |
9348588 |
atttcaatat-catagcatcttgcagagtatcacatgcaatatcattaa |
9348635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University