View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5021-Insertion-4 (Length: 630)
Name: NF5021-Insertion-4
Description: NF5021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5021-Insertion-4 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 302 - 630
Target Start/End: Complemental strand, 7866246 - 7865929
Alignment:
| Q |
302 |
ataattgattctaacaacctaaaatttgaaacagaattgattttatatgataattgattctaacaacctaaaatttgaaactttttgcaaactaatattt |
401 |
Q |
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| T |
7866246 |
ataattgattctaacaacctaaaatttgaaacggaattgattttatatgataattgattctaacaacctaaaatttgaaactttttgcaaattaatattt |
7866147 |
T |
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| Q |
402 |
gattttatacggttttggtcgctctattttcattcactcacatcctattttaaaataactcaattttggtttccttgtcata-nnnnnnnnnacttaaaa |
500 |
Q |
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| T |
7866146 |
gattttatacggttttggtcgctctattttcattcactcacgtcctattttaaaatcactcaattttgatttcctcatcatatattttttttacttaaaa |
7866047 |
T |
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| Q |
501 |
ttgttgacttgacatttttaaatacgacattgcatatcattgatgacatgaaatgatcaatatttattaaattacaaaatatccggtaaaaacttcaatt |
600 |
Q |
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| T |
7866046 |
ttgttgacttgacatttttaaatacga----------cattgatgacatgaagtgatcaatatttattaaattacaaaatatccgataaaaacttcaatt |
7865957 |
T |
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| Q |
601 |
tcaactttcagtttttaccatttttaagta |
630 |
Q |
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| T |
7865956 |
tcaac-ttcag-ttttaccatttttaagta |
7865929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 8 - 275
Target Start/End: Complemental strand, 7866522 - 7866244
Alignment:
| Q |
8 |
gaaccaaacaattgtttctatagtaatatttggtcacagagaatcttctaagatgtctttgctagtctttggtggactaatccgtcttcttgtcttggtt |
107 |
Q |
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| T |
7866522 |
gaaccaaacaattgtttctacagtaatttttggtcacaga--atcttctaagatgtctttgctagtctttggtggactaatccgtcttcttgtcttggtt |
7866425 |
T |
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| Q |
108 |
attccattaattaatt----tccttttgtttgttttgtggtgctttgagagattcctccttttgtattttgaactcttgtaattctttcattttaagcac |
203 |
Q |
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| T |
7866424 |
attctattaattaattattttccttttgtttgtttagtggtgctttgagagattcctccttttgtattttgaactcttgtaattctttcattttaagcac |
7866325 |
T |
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| Q |
204 |
aaattctgctccaatgaatttttaattcatccttggcttaaa---------ataaaattgatttcaatatgtttgaacata |
275 |
Q |
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| T |
7866324 |
aaattctgctccaatgaatttttaattcatccttggcttaaaaaaaatagtataaaattgatttcattatgtttgaacata |
7866244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 285 - 333
Target Start/End: Complemental strand, 7866214 - 7866166
Alignment:
| Q |
285 |
ggaattgattttatatgataattgattctaacaacctaaaatttgaaac |
333 |
Q |
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| T |
7866214 |
ggaattgattttatatgataattgattctaacaacctaaaatttgaaac |
7866166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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