View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5021-Insertion-6 (Length: 530)
Name: NF5021-Insertion-6
Description: NF5021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5021-Insertion-6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 7 - 382
Target Start/End: Original strand, 16742635 - 16743010
Alignment:
| Q |
7 |
agaaggtttataaatagggtaaaaaatatcaacaaaggtactaattctttacatgtatttaagttggaattgaatgacaaaggtgataagcttatgcatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16742635 |
agaaggtttataaatagggtaaaaaatatcaacaaaggtactaattctttacatgtatttaagttggaattgaatgacaaaggtgataagcttatgcatt |
16742734 |
T |
|
| Q |
107 |
tgtcgaaacttgagagtttaggagacaatgttttatttgtgggtgatggcgattcaatgtcagtatcaacttcatatttctcaagttatctgcaaaagga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16742735 |
tgtcgaaacttgagagtttaggagacaatgttttatttgtgggtgatggcgattcaatgtcagtatcaacttcatatttctcaagttatctacaaaagga |
16742834 |
T |
|
| Q |
207 |
ttctatttactattctgataattattataacgaagtaccggttccttatcctagaggtccttttgatatgggaatatataacataaagcatggaagcttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16742835 |
ttctatttactattctgataattattataacgaagtaccggttccttatcctagaggtccttttgatatgggaatatataacataaagcatggaagcttt |
16742934 |
T |
|
| Q |
307 |
ggtgttcattgcccttataaatcttacttcaaaggtatggcacctcccatatgggttgtaccaccttttcagtgga |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16742935 |
ggtgttcattgcccttataaatcttacttcaaaggtatggcacctcccatatgggttgtaccaccttttcagtgga |
16743010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 16724238 - 16724609
Alignment:
| Q |
7 |
agaaggtttataaatagggtaaaaaatatcaacaaaggtactaattctttacatgtatttaagttggaattgaatgacaaaggtgataagcttatgcatt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16724238 |
agaaggtttataaatagggtaaaaaatatcaacaaaggtactaattctttacatgtatttaagttggaattgaatgacaaaggtgataagcttatgcatt |
16724337 |
T |
|
| Q |
107 |
tgtcgaaacttgagagtttaggagacaatgttttatttgtgggtgatggcgattcaatgtcagtatcaacttcatatttctcaagttatctgcaaaagga |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16724338 |
tgtcgaaacttgagagtttaggagacaatgttttatttgtgggtgatggcgattcaatgtcagtatcaacttcatatttctcaagttatctacaaaagga |
16724437 |
T |
|
| Q |
207 |
ttctatttactattctgataattattataacgaagtaccggttccttatcctagaggtccttttgatatgggaatatataacataaagcatggaagcttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16724438 |
ttctatttactattctgataattattataacgaagtaccggttccttatcctagaggtccttttgatatgggaatatataacataaagcatggaagcttt |
16724537 |
T |
|
| Q |
307 |
ggtgttcattgcccttataaatcttacttcaaaggtatggcacctcccatatgggttgtaccaccttttcag |
378 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16724538 |
ggtgttcattgcccttataaatcttacttcaaaggtatggcacctcccatatgggttgtaccaccttttcag |
16724609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 472 - 530
Target Start/End: Original strand, 16724703 - 16724761
Alignment:
| Q |
472 |
catatttgtttgttatgctcataaaagtcttgttatgttgacaaaggataattaaaatc |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16724703 |
catatttgtttgttatgctcataaaagtcttgttatgttgacaaaggaccattaaaatc |
16724761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 472 - 530
Target Start/End: Original strand, 16743110 - 16743168
Alignment:
| Q |
472 |
catatttgtttgttatgctcataaaagtcttgttatgttgacaaaggataattaaaatc |
530 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16743110 |
catatttgttttttatgctcataaaagtcttgttatgttgacaaaggatcattaaaatc |
16743168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 28408485 - 28408398
Alignment:
| Q |
66 |
taagttggaattgaatgacaaaggtgataagcttatgcatttgtcgaaacttgagagtttaggagacaatgttttatttgtgggtgat |
153 |
Q |
| |
|
||||||||||||| || ||| ||| ||||||||| ||| ||| | |||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
28408485 |
taagttggaattggatcttaaaagtggtaagcttatacatatgttaagacttgatagtttgggagacaatgttttatttttgggtgat |
28408398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University