View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5021-Insertion-7 (Length: 388)
Name: NF5021-Insertion-7
Description: NF5021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5021-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 38486804 - 38486430
Alignment:
| Q |
8 |
gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc |
107 |
Q |
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| T |
38486804 |
gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc |
38486705 |
T |
|
| Q |
108 |
gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38486704 |
gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc |
38486605 |
T |
|
| Q |
208 |
aaagggtttgccaaaaccctctgccctaagatgacaaaacttgattcctgagctgacatgaaccaagcaagaggggaaacgaaacctgtaaatatatgtt |
307 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
38486604 |
aaagggtttgccaaaaccctctgccctaaggtgacaaaacttgattcctgagctgacataaaccaagcaagagaagaaacgaaacctgtaaatatatgtt |
38486505 |
T |
|
| Q |
308 |
ccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcggactttaa |
382 |
Q |
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| T |
38486504 |
ccctcactcccaaaatagttggttttcgaataccatagtaatgcttgaattcttccaagagatttcgtactttaa |
38486430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 220
Target Start/End: Complemental strand, 3686035 - 3685823
Alignment:
| Q |
8 |
gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctc |
107 |
Q |
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| T |
3686035 |
gattcaagccaacatctcttcctttacctacctgtatatattcatgatgtgtcacattgccacctcgcaatgtacaattgaaaccagcaaaaatatcttc |
3685936 |
T |
|
| Q |
108 |
gcttatgttgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttc |
207 |
Q |
| |
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|| || |||||||||||||| || || |||| ||||| ||| | |||||||| |||||||||||||| ||||| || || ||||| || | |||| |
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| T |
3685935 |
actaatattgatcactctagatgccttgctgactccacccctacacaagaaccaaaatctgtcaaacacatccggatgaccgtagtgcatccgtactttc |
3685836 |
T |
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| Q |
208 |
aaagggtttgcca |
220 |
Q |
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||||||||||||| |
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| T |
3685835 |
aaagggtttgcca |
3685823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 30121195 - 30120879
Alignment:
| Q |
16 |
ccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatattacctccacgaatagtacagttaaaaccggcaaaaatgtcctcgcttatgt |
115 |
Q |
| |
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|||||||||||||| |||||||| |||||||||||||| || |||| |||||||||||||| |||||| || || || ||||| |||||||||||||||| |
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| T |
30121195 |
ccaacatcccttccctttccaacctgaatgtattcatggtgagtgacattacctccacgaagagtacaattgaacccagcaaatatgtcctcgcttatgt |
30121096 |
T |
|
| Q |
116 |
tgatcactctagaagctttactgataccacctctagttataaaccaaaacctgtcaaacacatcaggatggccataatgcattcgaattttcaaagggtt |
215 |
Q |
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|||||||||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| || |
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| T |
30121095 |
tgatcactctggaagctttgctgataccacctcgagttaagaaccaaaacctgtcaaacacatctggatgaccataatgcattcgaactttcaaaggatt |
30120996 |
T |
|
| Q |
216 |
tgccaaaaccctctgccctaagatgacaaaacttgattcctgagctgacatgaaccaagcaagaggggaaacgaaacctgtaaatatatgttccctcact |
315 |
Q |
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||||||||||||||| |||| | |||| ||||||| ||||| |||||||||||||| ||||||| ||| ||| | || || || || |||||||| || |
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| T |
30120995 |
tgccaaaaccctctgtcctagggtgacgaaacttgtctcctgggctgacatgaaccaggcaagagaggacacggagccagtgaaaatgtgttccctgaca |
30120896 |
T |
|
| Q |
316 |
cccaaaatagttggttt |
332 |
Q |
| |
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|| ||||| |||||||| |
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| T |
30120895 |
cctaaaattgttggttt |
30120879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 43955843 - 43955900
Alignment:
| Q |
8 |
gattcaacccaacatcccttccttttccaacttgaatgtattcatgatgtgtgatatt |
65 |
Q |
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|||||| ||||||||| || || ||||||||||| |||||||||||||| || ||||| |
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| T |
43955843 |
gattcatcccaacatctctaccctttccaacttggatgtattcatgatgagtaatatt |
43955900 |
T |
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