View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5021_low_2 (Length: 305)

Name: NF5021_low_2
Description: NF5021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5021_low_2
NF5021_low_2
[»] chr8 (1 HSPs)
chr8 (213-305)||(6524586-6524681)
[»] chr1 (2 HSPs)
chr1 (94-188)||(29321939-29322032)
chr1 (94-136)||(14106850-14106892)
[»] chr5 (1 HSPs)
chr5 (94-188)||(22362729-22362823)
[»] chr4 (2 HSPs)
chr4 (94-188)||(1493978-1494072)
chr4 (131-188)||(12105402-12105459)
[»] chr2 (2 HSPs)
chr2 (94-188)||(17641381-17641475)
chr2 (94-188)||(27008429-27008523)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 6524681 - 6524586
Alignment:
Q  213 tggtcacaaacttctacagcttcaaacctgtagaagttattgt--caagtaagttctgctgccatc-ttttttggccctccaccatgaggtctttc 305  Q
    ||||||||||||||||||||||||||||||||||||||||| |   |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6524681 tggtcacaaacttctacagcttcaaacctgtagaagttattattgtaagtaagttctgctgccatctttttttggccctccaccatgaggtctttc 6524586  T

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Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 29322032 - 29321939
Alignment:
Q  94 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 188  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||||||||| | ||||| | |||||||||||||    
T  29322032 aaattataaaatgtgtgaaattact-aaatgcccataccacatcagcagtggtagaaaggggtgtatagaaagagtggtttgtgtatctttttcc 29321939  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 136
Target Start/End: Original strand, 14106850 - 14106892
Alignment:
Q  94 aaattataaaatgtgtgaaattactgaaatgctcataccacat 136  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  14106850 aaattataaaatgtgtgaaattactaaaatgcccataccacat 14106892  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 22362823 - 22362729
Alignment:
Q  94 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 188  Q
    ||||||||||||||||||||||||  |||||| |||||||||| |  ||||||| |||| ||||||||||| | |||||||||||||||||||||    
T  22362823 aaattataaaatgtgtgaaattacgaaaatgcccataccacatcattagtggtacaaaatggtgtatagaaagagtggtctatgtatctttttcc 22362729  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 1493978 - 1494072
Alignment:
Q  94 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 188  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | |||||||| |||||||||||||||| | ||||| | |||||||||||||    
T  1493978 aaattataaaatgtgtgaaactactaaaatgcccataccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc 1494072  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 12105402 - 12105459
Alignment:
Q  131 ccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 188  Q
    |||||| |||||||||| |||||||||||   || |||||||||||||||||||||||    
T  12105402 ccacatcagcagtggtataaaagggtgtaccaaaagggtggtctatgtatctttttcc 12105459  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 188
Target Start/End: Complemental strand, 17641475 - 17641381
Alignment:
Q  94 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 188  Q
    ||||||||||||||||||||||||| |||||| |||||||||| |  ||||||  ||| |||||||||||| | |||||||||||||||||||||    
T  17641475 aaattataaaatgtgtgaaattactaaaatgcccataccacattattagtggtgcaaaggggtgtatagaaagagtggtctatgtatctttttcc 17641381  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 188
Target Start/End: Original strand, 27008429 - 27008523
Alignment:
Q  94 aaattataaaatgtgtgaaattactgaaatgctcataccacataagcagtggtagaaaagggtgtatagaaggggtggtctatgtatctttttcc 188  Q
    |||||||||||||||||||| |||| |||||| |||||||||| | |||||||| |||||||||||||||| | ||||| | |||||||||||||    
T  27008429 aaattataaaatgtgtgaaactactaaaatgcccataccacatcatcagtggtacaaaagggtgtatagaaagagtggtttgtgtatctttttcc 27008523  T

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