View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5021_low_3 (Length: 219)
Name: NF5021_low_3
Description: NF5021
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5021_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 138 - 206
Target Start/End: Original strand, 47415121 - 47415189
Alignment:
| Q |
138 |
cctatgaacagactccttgaatttctcttcatcgagaaactggagtatgagaaaaacgagttctctgct |
206 |
Q |
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| T |
47415121 |
cctatgaacagactccttgaatttctcttcatcgagaaactggagtatgagaaaaacgagttctctgct |
47415189 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 203
Target Start/End: Complemental strand, 37249073 - 37249015
Alignment:
| Q |
145 |
acagactccttgaatttctcttcatcgagaaactggagtatgagaaaaacgagttctct |
203 |
Q |
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| T |
37249073 |
acagattccttgaacttctcctcatcaagaaactgaagtatgagaaaaaccaattctct |
37249015 |
T |
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