View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022-Insertion-1 (Length: 1092)
Name: NF5022-Insertion-1
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022-Insertion-1 |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 610; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 241 - 886
Target Start/End: Original strand, 1762906 - 1763550
Alignment:
| Q |
241 |
tattaagtccgacatgcctactatgacaaaaaatttctctttaagcatctatcaattgctcgcaaacacttgaaagatcttgtagaattgtagcacattt |
340 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1762906 |
tattaagtccgacatgcctactatgacaaaa-atttctctttaagcatctatcaattgctcgcaaacacttgaaagatcttgtagaattgtagcacattt |
1763004 |
T |
|
| Q |
341 |
tttagttcataagcttttcttaacaattaattgaagatattgaataaaaatgtgtacatgcagttatcaatggtgattcaagagacattgaggctttatc |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1763005 |
tttagttcataagcttttcttaacaattaattgaagatattgaataaaaatgtgtacatgcagttaacaatggtgattcaagagacattgaggctttatc |
1763104 |
T |
|
| Q |
441 |
caccagcattatcggttgttagacaggcttttgaagacattaatttcaaaggtatccaaattccaaaaggaatgaatcttcaaattccaatgccaatatt |
540 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1763105 |
caccagcattatcggttgttagacaggcttttgaagacattaatttcaaaggtatccaaattccaaaaggaatgaatcttcaaattccaatgccaatatt |
1763204 |
T |
|
| Q |
541 |
gcatcaagacccagagctttggggacatgatgcacataagttcaatccagaaagatttgcaaatggagtgcatggagtatgcaagattccacaagtttac |
640 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1763205 |
gcatcaagacccagagctttggggacatgatgcacataagttcaatccggaaagatttgcaaatggagtgcatggagcatgcaagattccacaagtttac |
1763304 |
T |
|
| Q |
641 |
atgccatttggaatgggacctcgtgtatgtttaggacagcatctagctatggttgaattgaaggtgatcttgtctctcatcttgttgaagtttcagttct |
740 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1763305 |
atgccatttggaatgggacctcgtgtatgtttaggacagcatctagctatggttgaattgaaggtgatcttgtctctcattttgttgaagtttcagttct |
1763404 |
T |
|
| Q |
741 |
ctctatcatcaagttattgtcattcacctttctaccacatgcttgtagaacctggccatggagttgctcttcacatgacaaaaatctaatgatcatgaca |
840 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1763405 |
ctctatcatcaagttattgtcattcaccttcctaccacatgcttgtagaacctggccatggagttgctcttcacatgacaaaaatctaatgatcatgacc |
1763504 |
T |
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| Q |
841 |
aatgtaaaactataaagattttctcatttttgttagggttctcaat |
886 |
Q |
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| T |
1763505 |
aatgtaaaactataaagattttctcatttttgttggggttctcaat |
1763550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 8 - 236
Target Start/End: Original strand, 1762640 - 1762868
Alignment:
| Q |
8 |
gctagctacacatccagattggcaagatcgtgttcgtgctgaggtgcttaaaatttgtggaaatgatggtattatagatgcaaatcaactgaaaagcatg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
1762640 |
gctagctacacatccagattggcaagatcgtgttcgtgctgaggtgcttaaaatttgtggaaaagatggtattgtagatgcaaatcaactgaaaagcatg |
1762739 |
T |
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| Q |
108 |
aaaacggtatgttcttacacaatctatgtactaaagtctcatgttccaatacattatgttttagctagagccgtcaaatgggtcggtcggtctcgttttg |
207 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1762740 |
aaaacggtatgtttttacacaatctatgtactaaagtctcatgttccaatacattatgttttagctagagccatcaaatgggtcggtcggtctcgttttg |
1762839 |
T |
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| Q |
208 |
gtctggtggatccagttacataaatgact |
236 |
Q |
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| T |
1762840 |
gtctggtggatccagttacataaatgact |
1762868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 923 - 982
Target Start/End: Original strand, 1763547 - 1763606
Alignment:
| Q |
923 |
caatatacacatttgtcgatgatgtatcattcagttcaatatttctagtttgacttttca |
982 |
Q |
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| T |
1763547 |
caatatacacatttgtcgatgatgtatcattcagttcaatatttctagtttgacttttca |
1763606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 483 - 768
Target Start/End: Original strand, 25197611 - 25197896
Alignment:
| Q |
483 |
atttcaaaggtatccaaattccaaaaggaatgaatcttcaaattccaatgccaatattgcatcaagacccagagctttggggacatgatgcacataagtt |
582 |
Q |
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|||| ||||||||| |||||||||||||||| | | |||| |||||||| || ||||| || ||||| || | ||||| |||||||| | || |
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| T |
25197611 |
atttaaaaggtatcaaaattccaaaaggaatcactattcagattccaatcccgatatttcaggaagacaaggatatatggggggtcgatgcacacgaatt |
25197710 |
T |
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| Q |
583 |
caatccagaaagatttgcaaatggagtgcatggagtatgcaagattccacaagtttacatgccatttggaatgggacctcgtgtatgtttaggacagcat |
682 |
Q |
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||| || ||||||||| ||||||| |||| |||| |||||| ||||||||| ||| |||||||||||||| || | ||||| ||| || || ||| |
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| T |
25197711 |
caaacctgaaagattttcaaatggtgtgcttggatcctgcaagtttccacaagcttatatgccatttggaatcggttcacgtgtctgtcccgggcaacat |
25197810 |
T |
|
| Q |
683 |
ctagctatggttgaattgaaggtgatcttgtctctcatcttgttgaagtttcagttctctctatcatcaagttattgtcattcacc |
768 |
Q |
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||| ||| | |||||||||||||| ||||||||||| ||| ||||||| |||||||| || |||| ||| ||||||||||| |
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| T |
25197811 |
ttaggcatgatagaattgaaggtgatattgtctctcattctgtcaaagtttcgattctctctgtcgtcaacttactgtcattcacc |
25197896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 444
Target Start/End: Original strand, 25197527 - 25197572
Alignment:
| Q |
399 |
tgcagttatcaatggtgattcaagagacattgaggctttatccacc |
444 |
Q |
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|||||||| ||||||||||||||||||| || ||||||||| |||| |
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| T |
25197527 |
tgcagttaacaatggtgattcaagagactttaaggctttattcacc |
25197572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 90; Significance: 6e-43; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 399 - 768
Target Start/End: Original strand, 10320 - 10689
Alignment:
| Q |
399 |
tgcagttatcaatggtgattcaagagacattgaggctttatccaccagcattatcggttgttagacaggcttttgaagacattaatttcaaaggtatcca |
498 |
Q |
| |
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|||||||| | ||||||||||||||||| |||||||||||||| |||||| ||| | ||| ||||| |||| ||||| | ||||||||| | |
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| T |
10320 |
tgcagttaaccatggtgattcaagagactttgaggctttatccgccagcagtatttctcaccagaacagctttccaagatattaacataaaaggtatcaa |
10419 |
T |
|
| Q |
499 |
aattccaaaaggaatgaatcttcaaattccaatgccaatattgcatcaagacccagagctttggggacatgatgcacataagttcaatccagaaagattt |
598 |
Q |
| |
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| ||||||||||||||||| |||| |||||||| ||||||||||| || ||| || ||||||| |||||||| |||||||||| ||||||||| |
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| T |
10420 |
agttccaaaaggaatgaatattcagattccaatcccaatattgcagcatgacattgatatttggggggccgatgcacacgagttcaatcctgaaagattt |
10519 |
T |
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| Q |
599 |
gcaaatggagtgcatggagtatgcaagattccacaagtttacatgccatttggaatgggacctcgtgtatgtttaggacagcatctagctatggttgaat |
698 |
Q |
| |
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| T |
10520 |
gcaaatggtgtgcttagagcctgcaagattccacaagcttatatgccatttggaatcggttctcgtgtctgtccaggacagcatttatccatgatagaat |
10619 |
T |
|
| Q |
699 |
tgaaggtgatcttgtctctcatcttgttgaagtttcagttctctctatcatcaagttattgtcattcacc |
768 |
Q |
| |
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|||||||| | ||||| || || ||| |||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
10620 |
tgaaggtgtttttgtcgcttattctgtcaaagtttcatgtctctctttcatcaagttactgtcattcacc |
10689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 9967 - 10070
Alignment:
| Q |
10 |
tagctacacatccagattggcaagatcgtgttcgtgctgaggtgcttaaaatttgtggaaatgatggtattatagatgcaaatcaactgaaaagcatgaa |
109 |
Q |
| |
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|||||||| | | |||||||||||||||||||||||| ||||||||| || ||||||||||||| || | ||||||||||| ||| | ||||||||| |
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| T |
9967 |
tagctacataccaagattggcaagatcgtgttcgtgcggaggtgcttgaagtttgtggaaatga---taatctagatgcaaatatacttagaagcatgaa |
10063 |
T |
|
| Q |
110 |
aacggta |
116 |
Q |
| |
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||||||| |
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| T |
10064 |
aacggta |
10070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 9e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 399 - 768
Target Start/End: Original strand, 19208060 - 19208429
Alignment:
| Q |
399 |
tgcagttatcaatggtgattcaagagacattgaggctttatccaccagcattatcggttgttagacaggcttttgaagacattaatttcaaaggtatcca |
498 |
Q |
| |
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|||||||| | ||||||||||||||||| ||||||||||||||||||||| ||| | ||| | || |||| |||||||| ||||||||| | |
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| T |
19208060 |
tgcagttaaccatggtgattcaagagactttgaggctttatccaccagcagtatttatcaccagaacatcattccaagatattaatttaaaaggtatcaa |
19208159 |
T |
|
| Q |
499 |
aattccaaaaggaatgaatcttcaaattccaatgccaatattgcatcaagacccagagctttggggacatgatgcacataagttcaatccagaaagattt |
598 |
Q |
| |
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| ||||||||||||| ||| | || |||||||| | |||||||| |||||| || | ||||| | |||||||| |||||||||| ||||||||| |
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| T |
19208160 |
agttccaaaaggaattaatatgcagattccaattgcgatattgcaacaagacattgatatctgggggcccgatgcacacgagttcaatcctgaaagattt |
19208259 |
T |
|
| Q |
599 |
gcaaatggagtgcatggagtatgcaagattccacaagtttacatgccatttggaatgggacctcgtgtatgtttaggacagcatctagctatggttgaat |
698 |
Q |
| |
|
|||||||| |||| ||||| |||||||||||||||| ||| |||||||||||||| || | ||||| ||| ||||||||| || | ||| | |||| |
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| T |
19208260 |
gcaaatggtgtgcttggagcctgcaagattccacaagcttatatgccatttggaatcggttcccgtgtctgtcctggacagcatttatccatgatagaat |
19208359 |
T |
|
| Q |
699 |
tgaaggtgatcttgtctctcatcttgttgaagtttcagttctctctatcatcaagttattgtcattcacc |
768 |
Q |
| |
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|||||||| | ||||| |||||| ||| ||||||| ||||||| || |||||||| ||||||||||| |
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| T |
19208360 |
tgaaggtgtttttgtcgctcatcctgtcaaagtttcgcgtctctctttcgtcaagttactgtcattcacc |
19208429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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