View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022-Insertion-11 (Length: 556)
Name: NF5022-Insertion-11
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022-Insertion-11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 7 - 556
Target Start/End: Complemental strand, 49766009 - 49765474
Alignment:
| Q |
7 |
acaaggttctgttacagtttctcaaaaccgtggtggaaagagttggggttgggctttcgctagtcctatgagagcttttagtagcaaaggatcttctaaa |
106 |
Q |
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| T |
49766009 |
acaaggttctgttacagtttctcaaaaccgtggtggaaagagttggggttgggctttcgctagtcctatgagagcttttagtagcaaaggatcttctaaa |
49765910 |
T |
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| Q |
107 |
gagaatcatcagaataatagaagagatattattagagatgctaatgataataataagaatgctacaccaaatttatctgctatgccatctttgctttctg |
206 |
Q |
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| T |
49765909 |
gagaatcatcagaataatagaagagatattattagagatgctaatgataataataagaatgctacaccaaatttatctgctatgccatctttgctttctg |
49765810 |
T |
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| Q |
207 |
ctagaggatgattgattacagaacaaggttggtaaagaataaaggagatttaacatttggtttattatacacattaattagtgtcaagttaattaattta |
306 |
Q |
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| T |
49765809 |
ctagaggatgattgattacagaacaaggttggtaaagaataaaggagatttaacatttggtttattatacacattaattagtgtcaagttaattaa-tta |
49765711 |
T |
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| Q |
307 |
ctactggtctattgttattacttcaactactttgtttatcttatgggtttgtcttaattaaatcataactttctagtaactcttcaaagttctagctagc |
406 |
Q |
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| T |
49765710 |
ctactggtc-------------tctactactttgtttatcttatgggtttgtcttaattaaatcataactttctagtaactcttcaaagttctagctagc |
49765624 |
T |
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| Q |
407 |
tagctctatctttcagttttgtggatacttgcttcttgttaatattcaggttttttgtgttatgattgtgaagttctgagtatgagctagagactagaga |
506 |
Q |
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| T |
49765623 |
tagctctatctttcagttttgtggatacttgcttcttgttaatattcaggttttttgtgttatgattgtgaagttctgagtatgagctagagactagaga |
49765524 |
T |
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| Q |
507 |
gtagagtcttcagtgttcagaactaagaagtcctctatggcataatggta |
556 |
Q |
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| T |
49765523 |
gtagagtcttcagtgttcagaactaagaagtcctctatggcataatggta |
49765474 |
T |
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