View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5022-Insertion-12 (Length: 311)

Name: NF5022-Insertion-12
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5022-Insertion-12
NF5022-Insertion-12
[»] chr7 (1 HSPs)
chr7 (7-311)||(27273763-27274067)
[»] scaffold0061 (2 HSPs)
scaffold0061 (7-311)||(670-973)
scaffold0061 (7-311)||(6181-6484)
[»] chr6 (1 HSPs)
chr6 (7-311)||(13551037-13551324)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 27273763 - 27274067
Alignment:
Q  7 accatttaccacattttcatgttctccaatttgaaccctcttttagttccttgccaaacagaaaactgaaaattggaagatagtcagatagataagtact 106  Q
    ||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  27273763 accatttaccacagtttcatgttctccaatttgaaccctctcttaattcctttccaaacagaaaactgaaaaatggaagatagtcagatagataagtact 27273862  T
Q  107 ttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcgtcgtaatgtgggttta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27273863 ttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcatcgtaatgtgggttta 27273962  T
Q  207 cacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  27273963 cacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagagtgcgtatgcaaatt 27274062  T
Q  307 ttgta 311  Q
    |||||    
T  27274063 ttgta 27274067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 670 - 973
Alignment:
Q  7 accatttaccacattttcatgttctccaatttgaaccctcttttagttccttgccaaacagaaaactgaaaattggaagatagtcagatagataagtact 106  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  670 accatttaccactgtttcatgttctccaatttgaaccctctcttaattcctt-ccaaaaagaaaactgaaaaatggaagatagttagatagataaatact 768  T
Q  107 ttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcgtcgtaatgtgggttta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  769 ttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccaactatgttagaatcgttgcagcgtcgtaatgtgggttta 868  T
Q  207 cacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaatt 306  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  869 cacacaattgtggcctgatgcgttcatggaaggatgaaggttcatttaaagaccaaagtccattgagttattaacgaaattaagaatgcgtatgcaaatt 968  T
Q  307 ttgta 311  Q
    |||||    
T  969 ttgta 973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 6181 - 6484
Alignment:
Q  7 accatttaccacattttcatgttctccaatttgaaccctcttttagttccttgccaaacagaaaactgaaaattggaagatagtcagatagataagtact 106  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||| |||||| ||||| ||||||||||||| ||||||||||| |||||||||| ||||    
T  6181 accatttaccactgtttcatgttctccaatttgaaccctctcttaattcctt-ccaaaaagaaaactgaaaaatggaagatagttagatagataaatact 6279  T
Q  107 ttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcgtcgtaatgtgggttta 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  6280 ttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccaactatgttagaatcgttgcagcgtcgtaatgtgggttta 6379  T
Q  207 cacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaatt 306  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||    
T  6380 cacacaattgtggcctgatgcgttcatggaaggatgaaggttcatttaaagaccaaagtccattgagttattaacgaaattaagaatgcgtatgcaaatt 6479  T
Q  307 ttgta 311  Q
    |||||    
T  6480 ttgta 6484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 7 - 311
Target Start/End: Original strand, 13551037 - 13551324
Alignment:
Q  7 accatttaccacattttcatgttctccaatttgaaccctcttttagttccttgccaaacagaaaactgaaaattggaagatagtcagatagataagtact 106  Q
    ||||||||||||| |||||||| |||||||||||||| ||        |||| ||||| ||||||||||||| || |||||||| |||||||||| ||||    
T  13551037 accatttaccacagtttcatgtcctccaatttgaaccatc--------cctttccaaaaagaaaactgaaaaatgtaagatagttagatagataaatact 13551128  T
Q  107 ttgtatgatcactacatcgggttgctgcatcttgactcggtgtgatgtggttcttgcaccgactatgttaaaatcgttgcagcgtcgtaatgtgggttta 206  Q
    |||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| | ||||||||| ||||||||||||||| |||| ||| ||||    
T  13551129 ttgtatgatcactacatcggat-gctgcatcttaactcggtgtgatgtggttcttgcatcaactatgttagaatcgttgcagcgtcttaatatggtttta 13551227  T
Q  207 cacacaattgtggcctgatgcggtcatggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaatt 306  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13551228 cacacaattgtggcctg--------atggaaggatgaaggttcatttaaagaccaaaatccattgagttatcaaagaaattaagaatgcgtatgcaaatt 13551319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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