View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022-Insertion-14 (Length: 249)
Name: NF5022-Insertion-14
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022-Insertion-14 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 247
Target Start/End: Original strand, 21850866 - 21851102
Alignment:
| Q |
8 |
aatagtataaaaattattaaggaattttgacttgcacaagaaggtgataaacaaaataggatgtctttgacaccactctaaagttgttctaactactatt |
107 |
Q |
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| T |
21850866 |
aatagtataaaaattattaaggaattttgacttgcacaagaaggtgataaacaaaataggatgtctttgacaccactctaaagttgttccaactactatt |
21850965 |
T |
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| Q |
108 |
atatttcaatgacaacaatgttgagttcatcatcttcaatttgaatattttttgaacaagacttctatttgaatattacattatattctatacaaatatt |
207 |
Q |
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| T |
21850966 |
atagttcaatgtcaacaatgttgagt---tcatcttcaatttgaatattttttgaacaagacttctatttgaatattacattatattctatccaaatatt |
21851062 |
T |
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| Q |
208 |
catacaactacgtcctttcattcctctatatatagaccaa |
247 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
21851063 |
catacaactacgtcctttcattcctctatatatagaccaa |
21851102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 135
Target Start/End: Original strand, 21180980 - 21181083
Alignment:
| Q |
33 |
tttgacttgcacaagaaggtgataaa-caaaataggatgtctttgacaccactctaaagttgttctaactactattatatttcaatgacaacaatgttga |
131 |
Q |
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|||||||| ||||||||| |||||| | |||| ||||||||||||||| |||||||||||||||||||||||| | | |||||||||| |||||| | |
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| T |
21180980 |
tttgacttagacaagaaggagataaaactaaattggatgtctttgacactactctaaagttgttctaactactagtcttgttcaatgacagtaatgttta |
21181079 |
T |
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| Q |
132 |
gttc |
135 |
Q |
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|||| |
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| T |
21181080 |
gttc |
21181083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 21197079 - 21197123
Alignment:
| Q |
56 |
aaacaaaataggatgtctttgacaccactctaaagttgttctaac |
100 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
21197079 |
aaacaaaattgaatgtctttgacaccactctaaagttgttctaac |
21197123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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