View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5022-Insertion-15 (Length: 288)

Name: NF5022-Insertion-15
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5022-Insertion-15
NF5022-Insertion-15
[»] chr2 (1 HSPs)
chr2 (8-288)||(9366829-9367109)


Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 288
Target Start/End: Complemental strand, 9367109 - 9366829
Alignment:
Q  8 gaaagcgcacaatatgacttccacattcatctattgcttccctaactctcagccagtgacacgtgacaaaatatgagtttaatcaggcttacaggaaaac 107  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  9367109 gaaagcgcacaatatgacttccaccttcatctcttgcttccctaactctcagccagtgacacgtgacgaaatatgagtttaatcaagcttacaggaaaac 9367010  T
Q  108 tccttcaatcaagcttaaattattcttaatattgatagtagctgcattggcgatgccgttagatttgggtttaatggattgctttgtcacccttcaaaag 207  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||    
T  9367009 tccttcaatcaagcttacattattcttaatattgatagtagctgcattggcgatcccgttagagttgggtttaatgggttgctttgtcacccttcaaaag 9366910  T
Q  208 tttggagtttaagtttctcaaagctcccctcaagatcctctgaaattcctcaagtcgagcttcaccgcatttatcatggga 288  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9366909 tttggagtttaagtttctcgaagctcccttcaagatcctctgaaattcctcaagtcgagcttcatcgcatttatcatggga 9366829  T

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