View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5022-Insertion-16 (Length: 102)

Name: NF5022-Insertion-16
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5022-Insertion-16
NF5022-Insertion-16
[»] chr7 (1 HSPs)
chr7 (8-102)||(3417818-3417912)
[»] chr5 (2 HSPs)
chr5 (11-99)||(12540482-12540570)
chr5 (11-100)||(28385131-28385220)
[»] chr2 (3 HSPs)
chr2 (19-99)||(13448168-13448248)
chr2 (11-100)||(13439997-13440086)
chr2 (11-99)||(13454631-13454719)
[»] chr4 (2 HSPs)
chr4 (52-99)||(48965167-48965214)
chr4 (11-98)||(48961088-48961175)


Alignment Details
Target: chr7 (Bit Score: 95; Significance: 5e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 5e-47
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 3417912 - 3417818
Alignment:
Q  8 gtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtca 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3417912 gtttagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgtca 3417818  T

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Target: chr5 (Bit Score: 49; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 12540482 - 12540570
Alignment:
Q  11 tagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatg 99  Q
    ||||||||||||||| |||||| |||||||||||||||  |||||| |||| || ||  ||||||||||||||||| ||||||||||||    
T  12540482 tagccttctctccaatctctcgtgcacgtagtctcatattttcagcttcataaccaccatccatcaatctcctcatagccttctctatg 12540570  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 9e-18
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 28385131 - 28385220
Alignment:
Q  11 tagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgt 100  Q
    ||||||||||||| | ||||||||||||| ||||||||  |||||| ||||| | || |||||||||| ||||||| |||||||||||||    
T  28385131 tagccttctctcctaactctcgagcacgttgtctcatattttcagcttcatcgccaccgtccatcaatttcctcatagccttctctatgt 28385220  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 13448168 - 13448248
Alignment:
Q  19 tctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatg 99  Q
    ||||||| ||||||||||||||| || |||  |||||| ||||||| || ||||||||||||||| |  ||||||||||||    
T  13448168 tctccaaactctcgagcacgtagcctgatattttcagcttcatcaccaccgtccatcaatctccttacagccttctctatg 13448248  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 13439997 - 13440086
Alignment:
Q  11 tagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatgt 100  Q
    ||||||| ||||||| |||| ||||| |||| ||||||  || ||| ||||||| | | ||||||||||||||||  |||||||||||||    
T  13439997 tagccttttctccaaactcttgagcaagtagcctcatatttttagcttcatcaccattctccatcaatctcctcacagccttctctatgt 13440086  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 13454631 - 13454719
Alignment:
Q  11 tagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctatg 99  Q
    ||||||| ||||||| ||||||||||||||  || |||  || ||| ||||||| || | |||||||||||||||  ||||||||||||    
T  13454631 tagccttttctccaaactctcgagcacgtaccctgatatttttagcttcatcaccaccgcccatcaatctcctcacagccttctctatg 13454719  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 48965167 - 48965214
Alignment:
Q  52 tcagcctcatcactactgtccatcaatctcctcattgccttctctatg 99  Q
    ||||| ||||||| ||||||||||||||||||||  ||||||||||||    
T  48965167 tcagcttcatcaccactgtccatcaatctcctcacagccttctctatg 48965214  T

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Target: chr4; HSP #2
Raw Score: 28; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 48961088 - 48961175
Alignment:
Q  11 tagccttctctccaagctctcgagcacgtagtctcataccttcagcctcatcactactgtccatcaatctcctcattgccttctctat 98  Q
    ||||||| || |||| ||||||||||||  |||| ||| |||| || ||||||| || |||||| ||| | |||| ||||||||||||    
T  48961088 tagccttatccccaaactctcgagcacgccgtcttatatcttcggcttcatcaccaccgtccattaattttctcactgccttctctat 48961175  T

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