View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5022-Insertion-20 (Length: 218)
Name: NF5022-Insertion-20
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022-Insertion-20 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 218
Target Start/End: Original strand, 14418442 - 14418652
Alignment:
| Q |
8 |
tatattacatatatttcagtaatcaaaacacaaacctatgcacaaaatacgcagattaatatgacaaacaatcatgtagacatgtttagtcatactaatc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14418442 |
tatattacatatatttcagtaatcaaaacacaaacctatgcacaaaatacgcagattaatatgacaaacaatcatgtagacatgtttagtcatactaatc |
14418541 |
T |
|
| Q |
108 |
aaaaaccaaaccaacacacacacgacatagaagcaaaaccaagaatccaaattacaaggtcatgcatagggattgttgttaatttgttagctggctacat |
207 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14418542 |
aaaaaccaaaccaacacacacacgacttagaagcaaaaccaagaatccaaattacaaggtcatgcatagggattgttgttaatttgttagctggctacat |
14418641 |
T |
|
| Q |
208 |
catcatttccc |
218 |
Q |
| |
|
||||||||||| |
|
|
| T |
14418642 |
catcatttccc |
14418652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University