View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5022-Insertion-6 (Length: 655)

Name: NF5022-Insertion-6
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5022-Insertion-6
NF5022-Insertion-6
[»] chr6 (1 HSPs)
chr6 (7-654)||(29447561-29448208)


Alignment Details
Target: chr6 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 7 - 654
Target Start/End: Original strand, 29447561 - 29448208
Alignment:
Q  7 agatttttggaccaaactttccctatttgtttgagaactaaacatggaaggcttcttagtaagatcgtcttgattcaaaggaacccttaaacctcgaata 106  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29447561 agattttcggaccaaactttccctatttgtttgagaactaaacatggaaggcttcttagtaagatcgtctagattcaaaggaacccttaaacctcgaata 29447660  T
Q  107 cactcactagcttgattccccaagttggtatcaccactaactaaccttttcaatgacttaactctatccatcgttgccatgttttgtactgaagattgaa 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29447661 cactcactagcttgattccccaagttggtatcaccactaactaaccttttcaatgacttaactctatccatcgttgccatgttttgtactgaaggttgaa 29447760  T
Q  207 ccctagtcgcatttcttaattcttctcttgataccatcggtgtattaatatgctttagtgtatccacgtcttttgcagattcggcattagtatgaagccc 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29447761 ccctagtcgcatttcttaattcttctcttgataccatcggtgtattaatatgctttagtgtatccacgtcttttgcagattcggcattagtatgaagccc 29447860  T
Q  307 acatttcttatatactgcatgactctgactcaatgattcatttcgagccaaaaatggtttcccaactgcattttctggaatcaaattttcacctttagaa 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  29447861 acatttcttatatactgcatgactctgactcaatgattcatttcgagccaaaaatggtttctcaactgcattttctggaatcaaattttcacctttagaa 29447960  T
Q  407 cttgaattacatgtgtgctgattcattaacctatgttcttccaagataggtgttttagaactcaactgatttctagcagcactgtcttttctctgtagtt 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29447961 cttgaattacatgtgtgctgattcattaacctatgttcttccaagataggtgttttagaactcaactgatttctagcagcactgtcttttctctgtagtt 29448060  T
Q  507 tgggacttcccgaattagctactttattcaaaggattgcgaactgcaccgttcttactggaatcggccaacttggaacaaagtttaaaagccaaaatgcg 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29448061 tgggacttcccgaattagctactttattcaaaggattgcgaactgcaccgttcttactggaatcggccaacttggaacaaagtttaaaagccaaaatgcg 29448160  T
Q  607 agattcaattcttttgattgtattaaccaaatcatcagagaaatcacc 654  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  29448161 agattcaattcttttgattgcattaaccaaatcatcagagaaatcacc 29448208  T

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