View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5022-Insertion-7 (Length: 636)
Name: NF5022-Insertion-7
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022-Insertion-7 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 593; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 8 - 636
Target Start/End: Complemental strand, 14305433 - 14304805
Alignment:
| Q |
8 |
tttgtagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaa |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305433 |
tttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaa |
14305334 |
T |
|
| Q |
108 |
tcacctttttgttcaaactagcctttttggtaactacccttttggctatacgttacactgttctaggaatcttggcttttactcaaaccaataacctttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305333 |
tcacctttttgttcaaactagcctttttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttc |
14305234 |
T |
|
| Q |
208 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttcc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14305233 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagttatagtgattctaatgttacatgagaaaaagttcaaatcttcc |
14305134 |
T |
|
| Q |
308 |
aaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305133 |
aaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgtttcggctattgttcgattgataactgtccgtgaag |
14305034 |
T |
|
| Q |
408 |
aaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcagg |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14305033 |
aaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcagg |
14304934 |
T |
|
| Q |
508 |
tattcatgtgataagaatacccgatgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaa |
607 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
14304933 |
tattcatgtgataagaatatccgatgtagtagccacatatccatcgatttcaatcgatagaactttgagtccttatgcccattcttcatttttgtccaaa |
14304834 |
T |
|
| Q |
608 |
acagggtggttttggctgaatcctttact |
636 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14304833 |
acagggtggttttggctgaatcctttact |
14304805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 8 - 636
Target Start/End: Complemental strand, 14321824 - 14321196
Alignment:
| Q |
8 |
tttgtagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaa |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| || |
|
|
| T |
14321824 |
tttgcagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaggacaaagattctgactatagaa |
14321725 |
T |
|
| Q |
108 |
tcacctttttgttcaaactagcctttttggtaactacccttttggctatacgttacactgttctaggaatcttggcttttactcaaaccaataacctttc |
207 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14321724 |
tcaccttttggttcaaactagcctttttggtaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataaactttc |
14321625 |
T |
|
| Q |
208 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttcc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
14321624 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtgatagtgatactaatggtacatgagaaaaagttcaaatcttcc |
14321525 |
T |
|
| Q |
308 |
aaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaag |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
14321524 |
aaacaccctttatcactaagaatctattggatagcaaactttgtaattgcaactttgtttgctgcttcagctattgttcgattgataactgtcggtgaag |
14321425 |
T |
|
| Q |
408 |
aaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcagg |
507 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
14321424 |
aaaagttggagcttagtttgaaaatagatgatatattctcattggttaatcttccattatctgtgttcttttttgtgatatccgtaaaagggtcatcagg |
14321325 |
T |
|
| Q |
508 |
tattcatgtgataagaatacccgatgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaa |
607 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||||||||| || ||||| | |||||||||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
14321324 |
tattcacgtgataagaatatccgatgtagtagcaacatatcggtcaatttcgaccgatagaactttgagtccttatgcttgttcgtcatttttgtctaaa |
14321225 |
T |
|
| Q |
608 |
acagggtggttttggctgaatcctttact |
636 |
Q |
| |
|
||||||||||||||| |||| |||||||| |
|
|
| T |
14321224 |
acagggtggttttggatgaaccctttact |
14321196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 13 - 633
Target Start/End: Complemental strand, 14283670 - 14283050
Alignment:
| Q |
13 |
agctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaatcacc |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||| ||| ||||| |||||||||||||||||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
14283670 |
agctcaaaaactctattcaagattctattcaagttccaactctacctccttaatcacaaaaccacttctgcaaaagaacgattctgactatagaatcacc |
14283571 |
T |
|
| Q |
113 |
tttttgttcaaactagcctttttggtaactacccttttggctatacgttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcat |
212 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14283570 |
ttttggttcaaactagcctttttgttaactacccttttggctataagttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcat |
14283471 |
T |
|
| Q |
213 |
ggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||| ||| |
|
|
| T |
14283470 |
ggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatggtacatgagataaagttgaaagcttccacaca |
14283371 |
T |
|
| Q |
313 |
ccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaag |
412 |
Q |
| |
|
||||||| |||| ||||| |||||| ||||||||||||||||||| ||||||| ||||||| |||||||||||| ||||||| || ||||| |||| |
|
|
| T |
14283370 |
ccctttaccacttagaatttattgggcagcaaactttgtgattgcttctttgttcactgcttcagctattgttcgaatgataaccgttggtgaaacaaag |
14283271 |
T |
|
| Q |
413 |
ttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattc |
512 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14283270 |
ttggagcttaatttgagaatagatgacatattctctttggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattc |
14283171 |
T |
|
| Q |
513 |
atgtgataagaatacccgatgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagg |
612 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14283170 |
atgtgataagaatatccgatgtagtagcaacatatccatcagtttccaccgatagaactttgagtccttatgcctgttcttcagttttgtccaaaacagt |
14283071 |
T |
|
| Q |
613 |
gtggttttggctgaatccttt |
633 |
Q |
| |
|
|||| |||| |||| ||||| |
|
|
| T |
14283070 |
ttggtattggatgaacccttt |
14283050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 36 - 633
Target Start/End: Complemental strand, 25886478 - 25885881
Alignment:
| Q |
36 |
tctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaatcacctttttgttcaaactagccttttt |
135 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| | |||| ||| |||||| ||| |||| || |
|
|
| T |
25886478 |
tctattcaagagcaaacactacctcctcaatcacaaagccacttctgaaagagaaagattctgactatagagtcactctttggttcaagctaaccttgtt |
25886379 |
T |
|
| Q |
136 |
ggtaactacccttttggctatacgttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcacttttt |
235 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25886378 |
ggtaactacccttttggctataacttacactgttctaggaatcttggcttttactcaaaccaataacctttcttcatggaaacaaatagaagcacctttt |
25886279 |
T |
|
| Q |
236 |
cggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctatt |
335 |
Q |
| |
|
||||||||||||||| || |||||| || || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25886278 |
cggttgtttcaagcagtagtcaacattgtgattgtgattctaatgttacatgagaaaaagttcaaatcttccaaacaccctttatcactaagaatctatt |
25886179 |
T |
|
| Q |
336 |
ggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaagaaaagttggagcttagtttgagaataga |
435 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||| ||| || | ||| | ||| || | |||| || |||||||| ||||||||||||||||| |
|
|
| T |
25886178 |
ggatagcaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaatgccagtgaggagaagttggaacttagtttgagaataga |
25886079 |
T |
|
| Q |
436 |
tgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcaggtattcatgtgataagaatacccgatgta |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
25886078 |
tgacatattctcattggttaatcttccattatctttgttcttttttgtcatatccattagagggtcatcagggattcatgtgataagaatatccgatgta |
25885979 |
T |
|
| Q |
536 |
gtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaaacagggtggttttggctgaatccttt |
633 |
Q |
| |
|
||||| |||||| ||||| || ||| ||| ||| ||||||||||||||| |||||||||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
25885978 |
gtagcgacatatacatcggttccaactgatggaaatttgagtccttatgctggttcttcatttttgtccaaaacagtttggttttggatgaacccttt |
25885881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 633
Target Start/End: Complemental strand, 44350350 - 44349725
Alignment:
| Q |
8 |
tttgtagctcaaaaactctattcaagattctattcaagagcaaacactagctcctcaatcacaaaaccacttctgcaagagaaagattctgactataaaa |
107 |
Q |
| |
|
|||| |||||| ||||||||||||||| || | |||| | |||| || ||| ||||||||||||||||||||| |||||||||| ||| |||||| | |
|
|
| T |
44350350 |
tttgcagctcacaaactctattcaagaatcaactcaaattccaacaataactcttcaatcacaaaaccacttctgaaagagaaagactctaactatagag |
44350251 |
T |
|
| Q |
108 |
tcacctttttgttcaaactagcctttttggtaactacccttttggctatacgttacactgttctaggaatcttggcttttactcaaaccaataacctttc |
207 |
Q |
| |
|
|||| ||| |||||||||| |||| |||||||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
44350250 |
tcactctttggttcaaactacccttgttggtaactaccattttggctataacttaaactgttctaggaatattggcttttactcaaaccaataacctttc |
44350151 |
T |
|
| Q |
208 |
ttcatggaaacaaatagaagcactttttcggttgtttcaagcaataaccaacatagtcatagtgattctaatgatacatgagaaaaagttcaaatcttcc |
307 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
44350150 |
ttcatggaaacaaatagaagcaccttttcggttgtttcaagctgtagtcaacatagtaatagtgattctaatgttacacgaggaaaagttcaaatcttcc |
44350051 |
T |
|
| Q |
308 |
aaacaccctttatcactaagaatctattggatagcaaactttgtgattgctactttgtttgctgcttcggctattgttcgattgataactgtccgtgaag |
407 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| ||| ||| || | ||| | ||| | | |||| | |
|
|
| T |
44350050 |
aaacaccctttatccctaagaatctattggatagtaaactttgtgattgcttctttgtttgctatttcagctgttttccgaattgtaaataccagtgagg |
44349951 |
T |
|
| Q |
408 |
aaaagttggagcttagtttgagaatagatgacatattctcattggttaatcttccattatctgtgttcttttttgtcatatcaataaaagggtcatcagg |
507 |
Q |
| |
|
|||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| || | |||||||||||| |
|
|
| T |
44349950 |
aaaaaatggaacttagtttgagaatagatgatatattctcattggttaatcttccattatctgcgttcttttttgtcatatccattagagggtcatcagg |
44349851 |
T |
|
| Q |
508 |
tattcatgtgataagaatacccgatgtagtagcaacatatccatcgatttcaatcgatagaactttgagtccttatgcctgttcttcatttttgtccaaa |
607 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||| |||||| |||| || | | ||| ||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
44349850 |
gattcttgtgataagaatatccgatgtagtagcgacatatacatcagttccgactgatggaaatttgagtccttatgctggttcttcatttttgtccaaa |
44349751 |
T |
|
| Q |
608 |
acagggtggttttggctgaatccttt |
633 |
Q |
| |
|
|||| ||||||||| |||| ||||| |
|
|
| T |
44349750 |
acagtttggttttggatgaacccttt |
44349725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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