View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022-Insertion-8 (Length: 649)
Name: NF5022-Insertion-8
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 8 - 649
Target Start/End: Complemental strand, 32667160 - 32666525
Alignment:
| Q |
8 |
tcggagacctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctccatctgtacaacaaagag |
107 |
Q |
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| T |
32667160 |
tcggagacctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctccatctgtacaacaaagag |
32667061 |
T |
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| Q |
108 |
agcttgtgttttactatctcttggtttctttagattcttcttaggtcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgca |
207 |
Q |
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| T |
32667060 |
agcttgtgttttactatctcttggtttctttagattcttcttagggcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgct |
32666961 |
T |
|
| Q |
208 |
aataaaaggacaagaggttcttttatagctgcggttttttctatgcaagggtttggtatattggctagtgcaaccgttactatggtggtttgcttggtat |
307 |
Q |
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| T |
32666960 |
aataaaaggacaagaggttcttttatagctgcggttttttctatgcaagggtttggtatattggctagtgcaactgttactatggtggtttgcttggtat |
32666861 |
T |
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| Q |
308 |
ttcgcagcggttcgaagccggcaacggcttttgatgtgccgccggaggctgacgttgcatggaggttgatactgatgattggttcagttccagctgcatt |
407 |
Q |
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| T |
32666860 |
ttcgcagcggttcgaagccggcaacggcttttgatgtgccgccggaggctgacgttgcatggaggttgatattgatgattggttcagttccagctgcatt |
32666761 |
T |
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| Q |
408 |
gacttattattggcgtatgatgatgccagaaactgccaggtagtttcttacccctctctacttcatatttaactcatatcaagtttggttgggtaacctt |
507 |
Q |
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| T |
32666760 |
gacttattattggcgtatgatgatgccagaaactgccaggtagtttcttgcccctctctacttcatatttaactcatatc-----tggttgggtaacctt |
32666666 |
T |
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| Q |
508 |
caagcaaaattcatttaaaa-tgaaaaatgttaactagtgctctggagggattagttaagaaaacggacactaattagggaagactctttaaaattatat |
606 |
Q |
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| T |
32666665 |
caagcaaaattcatttaaaattaaaaaatgttaagtagtgctccggagggactagttaaggaaacagacactaatta-agaagactctttaaaattatat |
32666567 |
T |
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| Q |
607 |
ctccaatcaaacttcaaatggtattattgtgtttttattttta |
649 |
Q |
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| T |
32666566 |
ctccaatcaaacttc-aacggtattattgtgtttttattttta |
32666525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 273
Target Start/End: Complemental strand, 37315913 - 37315765
Alignment:
| Q |
125 |
ctcttggtttctttagattcttcttaggtcttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagagg |
224 |
Q |
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| T |
37315913 |
ctctttgtttctttagattctggctaggttttggtattggtggtgattaccctctttcagctactattatgtctgaatatgccaacaaaaagactcgtgg |
37315814 |
T |
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| Q |
225 |
ttcttttatagctgcggttttttctatgcaagggtttggtatattggct |
273 |
Q |
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| T |
37315813 |
cgcgtttatagcttcggtttttgctatgcaagggtttggaattttggct |
37315765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 33109294 - 33109402
Alignment:
| Q |
155 |
ttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgca |
254 |
Q |
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| T |
33109294 |
ttggaattggtggtgattaccctctttctgctacaattatgtctgagtatgcgaacaagaagacgcgaggagcttttatcgctgcagtgtttgctatgca |
33109393 |
T |
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| Q |
255 |
agggtttgg |
263 |
Q |
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| T |
33109394 |
aggatttgg |
33109402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 263
Target Start/End: Original strand, 33115329 - 33115437
Alignment:
| Q |
155 |
ttggaattggtggtgattatcctttatcttctaccattatgtctgagtttgcaaataaaaggacaagaggttcttttatagctgcggttttttctatgca |
254 |
Q |
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|||||||||| |||||||| ||| | || |||| || |||||||||| ||||||||||| ||| | ||| | |||||||| || ||||| ||||||| |
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| T |
33115329 |
ttggaattggcggtgattaccctctttcagctactatcatgtctgagtatgcaaataaaaagactcgtggtgcatttatagcggctgttttcgctatgca |
33115428 |
T |
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| Q |
255 |
agggtttgg |
263 |
Q |
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| T |
33115429 |
aggttttgg |
33115437 |
T |
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