View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_high_13 (Length: 324)
Name: NF5022_high_13
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 43 - 308
Target Start/End: Complemental strand, 1241156 - 1240891
Alignment:
| Q |
43 |
aaaaaactcaatatgaaaccttcaacagaatcaaccaaggacacagccattgacattgataattcatcttccaaaagagtatctttctctgaccaacagc |
142 |
Q |
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| T |
1241156 |
aaaaaactcaatatgaaaccttcaacagaatcaaccaaggacacaaccattgacattgataattcatcttccaaaagagtatctttctctgaccaacagc |
1241057 |
T |
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| Q |
143 |
aacagcaccaacacaatgttcctttgttacttcaaccatcttatgcaagatcaaaatccatgatctttgatgaactaagaaactttcggatatgtcttaa |
242 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1241056 |
aacagcaccaacacaatgttcctttgttacttcagccatcttatgcaagatcaaaatccatgatctttgatgaactaagaaactttcggatatgtcttaa |
1240957 |
T |
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| Q |
243 |
atggtgtgctcttgatcactcatcttgtgttggaaaactcatttcttatgtttccttcatcttcct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1240956 |
atggtgtgctcttgatcactcatcttgtgttggaaaactcatttcttatgtttccttcatcttcct |
1240891 |
T |
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