View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5022_high_14 (Length: 319)

Name: NF5022_high_14
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5022_high_14
NF5022_high_14
[»] scaffold0133 (4 HSPs)
scaffold0133 (11-319)||(7849-8163)
scaffold0133 (97-319)||(12283-12505)
scaffold0133 (112-319)||(17504-17711)
scaffold0133 (11-62)||(12218-12269)
[»] chr6 (14 HSPs)
chr6 (92-319)||(16986883-16987110)
chr6 (92-319)||(16787396-16787623)
chr6 (118-319)||(16657467-16657668)
chr6 (167-319)||(16868505-16868657)
chr6 (191-319)||(16780627-16780755)
chr6 (169-319)||(17069012-17069162)
chr6 (169-319)||(16796675-16796825)
chr6 (11-62)||(16787336-16787387)
chr6 (11-62)||(16986823-16986874)
chr6 (12-62)||(16657382-16657432)
chr6 (167-229)||(18806791-18806853)
chr6 (167-229)||(18873785-18873847)
chr6 (17-62)||(16796541-16796586)
chr6 (17-62)||(17068878-17068923)
[»] scaffold0144 (2 HSPs)
scaffold0144 (92-319)||(36919-37146)
scaffold0144 (12-62)||(36860-36910)
[»] chr3 (2 HSPs)
chr3 (169-319)||(38939864-38940014)
chr3 (112-319)||(7053771-7053978)
[»] scaffold0256 (1 HSPs)
scaffold0256 (107-319)||(8595-8807)
[»] chr8 (2 HSPs)
chr8 (169-313)||(13377598-13377742)
chr8 (15-53)||(13377462-13377500)
[»] chr2 (1 HSPs)
chr2 (11-48)||(20153809-20153846)
[»] scaffold0511 (1 HSPs)
scaffold0511 (167-229)||(8857-8919)
[»] scaffold0230 (1 HSPs)
scaffold0230 (167-229)||(4176-4238)


Alignment Details
Target: scaffold0133 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 319
Target Start/End: Original strand, 7849 - 8163
Alignment:
Q  11 ttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgtggt------ttgatttttgaaaaaagagacttaaatttggttttttat 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||| ||||||||| || || ||||||||||||||    
T  7849 ttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgtggtcatattttgattttagaaaaaagaaacctatatttggttttttat 7948  T
Q  105 caaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatg 204  Q
    |||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7949 caaagatacttaaatggtgaacgccaattgacacattagtcgaatctgaaacatcataagaaatacattctttttccataatagactgagctaaatcatg 8048  T
Q  205 gataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattccatacctcatcacca 304  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8049 gataaaatcatgcattcggaatgtaatgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattccatacctcatcacca 8148  T
Q  305 acgtgctccatctgt 319  Q
    |||||||||||||||    
T  8149 acgtgctccatctgt 8163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 319
Target Start/End: Original strand, 12283 - 12505
Alignment:
Q  97 ttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagct 196  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| || |||| |||| ||||  ||||||||||||| | |||||||||||||   |||    
T  12283 ttttttatcaaagagacttatatggtgaactctaattgacaaatttgttaaatttgaagcatctgaagaaatacattcatctcccataatagacactgct 12382  T
Q  197 aaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattccatacct 296  Q
    |||||||||| |||||||||||||  ||| ||| |||||||| | ||||| ||||||||||||| ||| ||||| |||||  | |||| |||||||||||    
T  12383 aaatcatggacaaaatcatgcattttgaaagtaatgttacctacaaaatctgatttaacttcttcaaataatgacctttggtataattcattccatacct 12482  T
Q  297 catcaccaacgtgctccatctgt 319  Q
    ||| |||||| ||||||||||||    
T  12483 cattaccaacatgctccatctgt 12505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 112 - 319
Target Start/End: Original strand, 17504 - 17711
Alignment:
Q  112 acttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatggataaaa 211  Q
    ||||| ||||||||||| ||||||||||| || |||   |||||| | | |||  | |||||||| ||| ||||| || ||||||||||||||||  |||    
T  17504 acttatatggtgaactctaattgacaaatcagccaagcttgaaaccttagaagccacacattcttctccaataatggaatgagctaaatcatggactaaa 17603  T
Q  212 tcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattccatacctcatcaccaacgtgct 311  Q
    |||||||||  ||||||| |||||||| | ||||| ||||| ||||||||||| ||||| |||||    |||| |||||||||||||| |||||| ||||    
T  17604 tcatgcattttgaatgtaatgttacctacaaaatctgatttgacttcttgaaagaatgacctttggtttaattcattccatacctcattaccaacatgct 17703  T
Q  312 ccatctgt 319  Q
    ||||||||    
T  17704 ccatctgt 17711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 12218 - 12269
Alignment:
Q  11 ttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 62  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  12218 ttatactcaagaaaggttcgcaaggaatcaaatttttggaagggaatcatgt 12269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 92 - 319
Target Start/End: Original strand, 16986883 - 16987110
Alignment:
Q  92 tttggttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagact 191  Q
    |||| |||||||||||||||||| | ||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |    
T  16986883 tttgattttttatcaaagagactcatatggtgaactctaattgacaaattagtcaactttgaaacatcataagaaatacattcttctcccataatagatt 16986982  T
Q  192 gagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattcca 291  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16986983 gagctaaatcatggataaaatcatgcattttgaatgtaatgttacctgttaaatcagatttaacttcttgaaaaaatgatctttgccataattgattcca 16987082  T
Q  292 tacctcatcaccaacgtgctccatctgt 319  Q
    ||||||||||||||| ||||||||||||    
T  16987083 tacctcatcaccaacatgctccatctgt 16987110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 92 - 319
Target Start/End: Original strand, 16787396 - 16787623
Alignment:
Q  92 tttggttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagact 191  Q
    |||| ||| |||||||||||||||| ||||||||||| |||||| ||||||||||| | ||| |||||||||||||||||||||| |||||||| |||||    
T  16787396 tttgatttgttatcaaagagacttatatggtgaactctaattgaaaaattagtcaactttgagacatcataagaaatacattcttctcccataaaagact 16787495  T
Q  192 gagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattcca 291  Q
    || ||||||||||||||||||||||||||  ||||||| |||||||  | ||||| ||||||||||||||||||||||| |||||  | |||| ||||||    
T  16787496 gacctaaatcatggataaaatcatgcattttgaatgtaatgttaccaacaaaatctgatttaacttcttgaaaaaatgacctttggtataattcattcca 16787595  T
Q  292 tacctcatcaccaacgtgctccatctgt 319  Q
    |||||||| |||||| | ||||||||||    
T  16787596 tacctcattaccaacatcctccatctgt 16787623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 118 - 319
Target Start/End: Original strand, 16657467 - 16657668
Alignment:
Q  118 atggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatggataaaatcatgc 217  Q
    ||||||||||| ||||| |||||||||||| | |||||||||| |||| | |||||||| |||||||||||||||||||||||||||||  |||||||||    
T  16657467 atggtgaactctaattggcaaattagtcaactttgaaacatcacaagagacacattcttctcccataatagactgagctaaatcatggactaaatcatgc 16657566  T
Q  218 attcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattccatacctcatcaccaacgtgctccatct 317  Q
    |||   |||||| |||||||| ||||||| ||||  ||||||||||||||||| |||||  | |||| |||||||||||||| |||||| ||||||||||    
T  16657567 attttaaatgtaatgttacctactaaatctgattcgacttcttgaaaaaatgacctttgatataattcattccatacctcattaccaacatgctccatct 16657666  T
Q  318 gt 319  Q
    ||    
T  16657667 gt 16657668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 167 - 319
Target Start/End: Complemental strand, 16868657 - 16868505
Alignment:
Q  167 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaa 266  Q
    |||||||||| ||| |||| ||||| ||||||||||||||  ||||||||||||  ||||||| |||||||| ||||||| ||||| | |||||||||||    
T  16868657 atacattcttctccaataacagacttagctaaatcatggactaaatcatgcattttgaatgtaatgttacctactaaatctgatttgatttcttgaaaaa 16868558  T
Q  267 atgatctttgccacaattgattccatacctcatcaccaacgtgctccatctgt 319  Q
    |||| |||||  | |||| |||||||||||||| |||||| ||||||||||||    
T  16868557 atgacctttgatataattcattccatacctcattaccaacatgctccatctgt 16868505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 191 - 319
Target Start/End: Original strand, 16780627 - 16780755
Alignment:
Q  191 tgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattcc 290  Q
    ||||||||||||||||  ||||||||||||  ||||||| |||||||| | ||||| ||||||||||||||||||||||| |||||  | |||| |||||    
T  16780627 tgagctaaatcatggactaaatcatgcattttgaatgtaatgttacctacaaaatctgatttaacttcttgaaaaaatgacctttggtataattcattcc 16780726  T
Q  291 atacctcatcaccaacgtgctccatctgt 319  Q
    ||||||||| |||||| ||||||||||||    
T  16780727 atacctcattaccaacatgctccatctgt 16780755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 17069012 - 17069162
Alignment:
Q  169 acattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaat 268  Q
    |||||||| ||| |||| ||||| ||||||||||||||  ||||||||||||   |||||| |||||||||||||||| ||||| |||||||||||||||    
T  17069012 acattcttctccaataacagacttagctaaatcatggactaaatcatgcattttaaatgtaatgttacctgctaaatctgatttgacttcttgaaaaaat 17069111  T
Q  269 gatctttgccacaattgattccatacctcatcaccaacgtgctccatctgt 319  Q
    || |||||  | |||| || ||||| ||||| |||||| ||||||||||||    
T  17069112 gacctttggtataattcatcccatatctcattaccaacatgctccatctgt 17069162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 16796675 - 16796825
Alignment:
Q  169 acattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaat 268  Q
    |||||||| | |||||| ||||| |||||||||||| |  ||||||||||||  ||||||| |||||||||||||||| ||||| |||||||||||||||    
T  16796675 acattcttctaccataacagacttagctaaatcatgcactaaatcatgcattttgaatgtaatgttacctgctaaatctgatttgacttcttgaaaaaat 16796774  T
Q  269 gatctttgccacaattgattccatacctcatcaccaacgtgctccatctgt 319  Q
    || |||||  | |||| || ||||| | ||| |||||| ||||||||||||    
T  16796775 gacctttggtataattcatcccatatcccattaccaacatgctccatctgt 16796825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 16787336 - 16787387
Alignment:
Q  11 ttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 62  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  16787336 ttatactcaagaaaggttcgcaaggaatcaaatttttggaagggaatcatgt 16787387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 16986823 - 16986874
Alignment:
Q  11 ttatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 62  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  16986823 ttatactcaagaaaggttcgcaaggaatcaactttttggcagggaatcatgt 16986874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 16657382 - 16657432
Alignment:
Q  12 tatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 62  Q
    |||||||||| || |||||||||||||||||||||||||||||||| ||||    
T  16657382 tatactcaaggaaagttcgcaaggaatcaactttttggaagggaatcatgt 16657432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 18806853 - 18806791
Alignment:
Q  167 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgta 229  Q
    |||||||||| |||  |||| ||||||||||||||||| || ||||||||||||  |||||||    
T  18806853 atacattcttctcctgtaatggactgagctaaatcatgaattaaatcatgcattttgaatgta 18806791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 18873847 - 18873785
Alignment:
Q  167 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgta 229  Q
    |||||||||| |||  |||| ||||||||||||||||| || ||||||||||||  |||||||    
T  18873847 atacattcttctcctgtaatggactgagctaaatcatgaattaaatcatgcattttgaatgta 18873785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 16796541 - 16796586
Alignment:
Q  17 tcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 62  Q
    |||||||||||||||||||| |||||||||| ||| ||||| ||||    
T  16796541 tcaagaaaggttcgcaaggattcaacttttttgaaaggaatcatgt 16796586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Original strand, 17068878 - 17068923
Alignment:
Q  17 tcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 62  Q
    |||||||||||||||||||| |||||||||| ||| ||||| ||||    
T  17068878 tcaagaaaggttcgcaaggattcaacttttttgaaaggaatcatgt 17068923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 92 - 319
Target Start/End: Original strand, 36919 - 37146
Alignment:
Q  92 tttggttttttatcaaagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagact 191  Q
    |||| ||| |||||||| || || | ||||||||||| ||||| |||||||||||| | |||||||||| |||| | |||||||| ||||||||||||||    
T  36919 tttgatttgttatcaaacagcctgatatggtgaactctaattggcaaattagtcaactttgaaacatcacaagagacacattcttctcccataatagact 37018  T
Q  192 gagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattcca 291  Q
    |||||||||||||||  ||||||||||||  ||||||| |||||||||||||||| ||||  ||||||||||||||||| |||||  | |||| ||||||    
T  37019 gagctaaatcatggactaaatcatgcattttgaatgtaatgttacctgctaaatctgattcgacttcttgaaaaaatgacctttgatataattcattcca 37118  T
Q  292 tacctcatcaccaacgtgctccatctgt 319  Q
    |||||||| |||||| ||||||||||||    
T  37119 tacctcattaccaacatgctccatctgt 37146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0144; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 36860 - 36910
Alignment:
Q  12 tatactcaagaaaggttcgcaaggaatcaactttttggaagggaattatgt 62  Q
    |||||||||| || ||||||||||||||||| |||||||||||||| ||||    
T  36860 tatactcaaggaaagttcgcaaggaatcaacattttggaagggaatcatgt 36910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 38940014 - 38939864
Alignment:
Q  169 acattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaat 268  Q
    |||||||| |||||| | ||||||||||||||||||||| ||||||||||||  ||||||| |||||||| | ||||| ||||| |||||||||||||||    
T  38940014 acattcttctcccattacagactgagctaaatcatggattaaatcatgcattttgaatgtaatgttacctacaaaatctgatttgacttcttgaaaaaat 38939915  T
Q  269 gatctttgccacaattgattccatacctcatcaccaacgtgctccatctgt 319  Q
    || |||||  | |||| |||||||||||||| |||||| ||||||||||||    
T  38939914 gacctttggtataattcattccatacctcattaccaacatgctccatctgt 38939864  T

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Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 112 - 319
Target Start/End: Complemental strand, 7053978 - 7053771
Alignment:
Q  112 acttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatggataaaa 211  Q
    ||||| ||||||||||| |||||||||||  | |||   |||||| ||| |||  | |||||||| ||||||||| ||||||||||||||||| |  |||    
T  7053978 acttatatggtgaactctaattgacaaatcggccaagcttgaaacctcagaagccacacattcttctcccataatggactgagctaaatcatgaaccaaa 7053879  T
Q  212 tcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattccatacctcatcaccaacgtgct 311  Q
    |||||||||   |||||| |||| ||| ||| |||||||||||||||||||||||||||||||||  | |||| |||||||||||||| |||||   |||    
T  7053878 tcatgcattttaaatgtaatgttccctactatatcagatttaacttcttgaaaaaatgatctttgatataattcattccatacctcattaccaagaagct 7053779  T
Q  312 ccatctgt 319  Q
    ||||||||    
T  7053778 ccatctgt 7053771  T

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Target: scaffold0256 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 107 - 319
Target Start/End: Original strand, 8595 - 8807
Alignment:
Q  107 aagagacttaaatggtgaactccaattgacaaattagtcaaatctgaaacatcataagaaatacattcttttcccataatagactgagctaaatcatgga 206  Q
    |||| ||||| ||||||| ||| | |||||| |||||||||  |||||   ||| |||  | ||| |||| |||||||| ||| ||||||||||||||||    
T  8595 aagaaacttatatggtgagctctagttgacagattagtcaagcctgaagactcagaagccacacactcttctcccataacagattgagctaaatcatgga 8694  T
Q  207 taaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaatgatctttgccacaattgattccatacctcatcaccaac 306  Q
      ||||||||||||  ||| ||| |||||||| | ||||| ||||| ||||||||||| ||||| |||||    |||| |||||||||||||| ||||||    
T  8695 ctaaatcatgcattttgaaagtaatgttacctacaaaatcggatttgacttcttgaaagaatgacctttggtttaattcattccatacctcattaccaac 8794  T
Q  307 gtgctccatctgt 319  Q
     ||||||||||||    
T  8795 atgctccatctgt 8807  T

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Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 313
Target Start/End: Original strand, 13377598 - 13377742
Alignment:
Q  169 acattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgtagtgttacctgctaaatcagatttaacttcttgaaaaaat 268  Q
    |||||||| |||||| || || ||||||||||||||||  ||||||||||||  ||||||  |||||||| | | ||| |||||||||||||||||||||    
T  13377598 acattcttctcccattatggattgagctaaatcatggactaaatcatgcattttgaatgttatgttacctaccacatctgatttaacttcttgaaaaaat 13377697  T
Q  269 gatctttgccacaattgattccatacctcatcaccaacgtgctcc 313  Q
    |||||||| || || | || ||||||||||| |||||| ||||||    
T  13377698 gatctttggcataactcatcccatacctcattaccaacatgctcc 13377742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 13377462 - 13377500
Alignment:
Q  15 actcaagaaaggttcgcaaggaatcaactttttggaagg 53  Q
    |||||||||||||||||||||| |||||||||| |||||    
T  13377462 actcaagaaaggttcgcaaggattcaactttttcgaagg 13377500  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 20153809 - 20153846
Alignment:
Q  11 ttatactcaagaaaggttcgcaaggaatcaactttttg 48  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  20153809 ttatactcaagaaaggtccgcaaggaatcaactttttg 20153846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 8857 - 8919
Alignment:
Q  167 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgta 229  Q
    |||||||||| |||  |||| ||||||||||||||||| || ||||||||||||  |||||||    
T  8857 atacattcttctcctgtaatggactgagctaaatcatgaattaaatcatgcattttgaatgta 8919  T

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Target: scaffold0230 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 4176 - 4238
Alignment:
Q  167 atacattcttttcccataatagactgagctaaatcatggataaaatcatgcattcggaatgta 229  Q
    |||||||||| |||  |||| ||||||||||||||||| || ||||||||||||  |||||||    
T  4176 atacattcttctcctgtaatggactgagctaaatcatgaattaaatcatgcattttgaatgta 4238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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