View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_high_15 (Length: 287)
Name: NF5022_high_15
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_high_15 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 36 - 284
Target Start/End: Complemental strand, 24375246 - 24374996
Alignment:
| Q |
36 |
ttgagtaaaatgaattttgtagggaagattgttgtgtatcgatttgtagtcggacgaggtgcaatcgttgttagtggtttaggctttttctctctgtttt |
135 |
Q |
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| T |
24375246 |
ttgagtaaaatgaattttgtagggaagattggtgtgtattgatttgtagtcggacgaggtgcaatcattgttagtagtttaggctctgtctctctgtttt |
24375147 |
T |
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| Q |
136 |
gggttttggaaatggcaagggtgttggtttattgtgttgaggcttttgtttgattttggggc--ttgtggggaagtcttgaatttgaaagttggttttgt |
233 |
Q |
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| T |
24375146 |
ggattttggaaatggcaagggtgttggtgtatgatgttgaggcttttgtttggttttggggctgttgtggggaagttttgaatttgaaagttgattttgt |
24375047 |
T |
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| Q |
234 |
attgacttgtgtcgggcgaggtgcggatatggtggaaggttgtggtagggg |
284 |
Q |
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| T |
24375046 |
attgacttgtgtcgggcgaggtgcggatatggtggaaggttgtggtagggg |
24374996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 108 - 287
Target Start/End: Complemental strand, 29177280 - 29177093
Alignment:
| Q |
108 |
agtggtttaggctttttctctctgttttgggttttggaaatggcaagggtgttggtttattgtgttgaggcttttgtttgattttggggct--tgtgggg |
205 |
Q |
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| T |
29177280 |
agtggtttcggctttgtctctctgttttgggtttcggcaatggcaggggtgttggcgtatggcactgacgcttttgtttggttttggggctgttgtgggg |
29177181 |
T |
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| Q |
206 |
aagtcttg------aatttgaaagttggttttgtattgacttgtgtcgggcgaggtgcggatatggtggaaggttgtggtaggggctg |
287 |
Q |
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| T |
29177180 |
aggtctcgtgttggaatttgaaagttggttttttattggcttgtgtcggatgaggtgcagatgtggtggaaggttgtggtaggggctg |
29177093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 32737227 - 32737393
Alignment:
| Q |
29 |
atggagtttgagtaaaatgaattttgtagggaagattgttgtgtatcgatttgtag---tcggacgaggtgcaatcgttgttagtggtttaggctttttc |
125 |
Q |
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| T |
32737227 |
atggagtttgagtaagatgaattttgtagggaagattgtcgtgtatcaatttgtacaaatcgaacgaggtgtgactgttgaaagtggtttcagctttgtc |
32737326 |
T |
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| Q |
126 |
tctctgttttgggttttggaaatggcaagggtgttggtttattgtgttgaggcttttgtttgatttt |
192 |
Q |
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| T |
32737327 |
tctctgttttgggttttggcaatggcaggggtgttggtgtatggtgttgtggtttttgtttggtttt |
32737393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 213 - 287
Target Start/End: Original strand, 41789114 - 41789188
Alignment:
| Q |
213 |
gaatttgaaagttggttttgtattgacttgtgtcgggcgaggtgcggatatggtggaaggttgtggtaggggctg |
287 |
Q |
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| T |
41789114 |
gaatttgaaagttgattttgtattgatttatgtcggacgaagtgcggatgtggtggaaggttgtggcaggggctg |
41789188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 32737415 - 32737472
Alignment:
| Q |
230 |
ttgtattgacttgtgtcgggcgaggtgcggatatggtggaaggttgtggtaggggctg |
287 |
Q |
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| T |
32737415 |
ttgtattggcttgtgtcggacgaagtgcggatgtggtggaagattgtggtaggggctg |
32737472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 5824410 - 5824346
Alignment:
| Q |
223 |
gttggttttgtattgacttgtgtcgggcgaggtgcggatatggtggaaggttgtggtaggggctg |
287 |
Q |
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| T |
5824410 |
gttggttttgtattggcttgtgtcggacgaagtgcagatgtagtggaaggttgtggtaggggctg |
5824346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0136 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 39771 - 39833
Alignment:
| Q |
33 |
agtttgagtaaaatgaattttgtagggaagattgttgtgtatcgatttgtagtcggacgaggt |
95 |
Q |
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| T |
39771 |
agtttgagtgagataaattttgtcaggaagattgttatgtattgatttatagtcggacgaggt |
39833 |
T |
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