View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_high_22 (Length: 254)
Name: NF5022_high_22
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 8148848 - 8148602
Alignment:
| Q |
17 |
gaagtgaccaatccttgtttttggttagctcaccaactctagaatctgcagtatttatatttataat-------------aaattaaatcttctatcttg |
103 |
Q |
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| T |
8148848 |
gaagtgaccaaaccttgtttttggttagctcaccaactctagaatctgcagtatttatagttataattataaattaaattaaattaaatcttctatcttg |
8148749 |
T |
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| Q |
104 |
ctccgaataataatgattttacattaaacaaacaaggaaacatatttgagnnnnnnnnaccaatgaagttgcacacaagaaatgaagatacagcgtagac |
203 |
Q |
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| T |
8148748 |
ctccgaataataatgtttttacattaaacaaacaaggaaacatatttgagttttttttaccaatgaagttgcacacaagaaatgaagatacagcgtagag |
8148649 |
T |
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| Q |
204 |
agttttactttgctagtgcacataatacatgttaagaataatctacc |
250 |
Q |
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| T |
8148648 |
agctttactttgcttgtgcacataatacatgttaagaacaatctacc |
8148602 |
T |
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