View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5022_high_23 (Length: 250)

Name: NF5022_high_23
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5022_high_23
NF5022_high_23
[»] chr8 (18 HSPs)
chr8 (115-218)||(35505406-35505509)
chr8 (1-96)||(7140543-7140638)
chr8 (1-96)||(10129102-10129197)
chr8 (1-96)||(40210905-40211000)
chr8 (1-96)||(13328025-13328120)
chr8 (1-96)||(19343921-19344016)
chr8 (1-93)||(39701887-39701979)
chr8 (34-96)||(38527819-38527881)
chr8 (38-96)||(3306176-3306234)
chr8 (47-96)||(2161386-2161435)
chr8 (8-85)||(9801678-9801755)
chr8 (9-94)||(35678367-35678452)
chr8 (37-93)||(39703455-39703511)
chr8 (9-96)||(14816218-14816305)
chr8 (9-96)||(14829435-14829522)
chr8 (34-96)||(4080511-4080573)
chr8 (34-96)||(4084660-4084722)
chr8 (34-96)||(4102967-4103029)
[»] chr2 (14 HSPs)
chr2 (2-96)||(39904133-39904227)
chr2 (1-96)||(12016665-12016760)
chr2 (1-96)||(16126643-16126738)
chr2 (1-96)||(19228424-19228519)
chr2 (1-96)||(10690781-10690876)
chr2 (1-96)||(16919238-16919333)
chr2 (1-96)||(22705453-22705548)
chr2 (1-96)||(27665128-27665223)
chr2 (1-96)||(26229938-26230032)
chr2 (1-96)||(14377423-14377518)
chr2 (47-96)||(5583688-5583737)
chr2 (1-96)||(15411706-15411802)
chr2 (1-79)||(13351295-13351374)
chr2 (1-79)||(16123294-16123372)
[»] chr7 (15 HSPs)
chr7 (1-93)||(3561962-3562054)
chr7 (1-94)||(39757194-39757287)
chr7 (1-96)||(9331960-9332055)
chr7 (1-96)||(24250312-24250407)
chr7 (1-96)||(19889339-19889434)
chr7 (1-96)||(5909366-5909461)
chr7 (1-96)||(47120278-47120373)
chr7 (8-95)||(12086022-12086109)
chr7 (1-58)||(384514-384571)
chr7 (10-93)||(36548553-36548636)
chr7 (47-96)||(33342987-33343036)
chr7 (52-96)||(34270264-34270308)
chr7 (9-96)||(23982848-23982935)
chr7 (47-96)||(46290009-46290058)
chr7 (34-94)||(19868114-19868174)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-96)||(52863-52958)
[»] scaffold0017 (1 HSPs)
scaffold0017 (1-96)||(145676-145771)
[»] chr5 (14 HSPs)
chr5 (1-96)||(2795522-2795617)
chr5 (1-93)||(9184209-9184301)
chr5 (1-96)||(34578010-34578105)
chr5 (1-96)||(30328411-30328506)
chr5 (1-79)||(11375975-11376053)
chr5 (1-78)||(4047429-4047506)
chr5 (1-96)||(15190871-15190966)
chr5 (9-96)||(10665058-10665144)
chr5 (9-96)||(11636730-11636817)
chr5 (47-96)||(30839780-30839829)
chr5 (47-96)||(36597578-36597627)
chr5 (38-96)||(31366073-31366131)
chr5 (53-95)||(40512951-40512993)
chr5 (1-78)||(28629895-28629972)
[»] chr3 (14 HSPs)
chr3 (1-96)||(3863328-3863423)
chr3 (1-96)||(11610913-11611008)
chr3 (4-93)||(51339271-51339360)
chr3 (9-94)||(20938057-20938142)
chr3 (17-95)||(32553366-32553444)
chr3 (1-95)||(50364190-50364284)
chr3 (1-93)||(54621302-54621394)
chr3 (9-96)||(13495292-13495379)
chr3 (47-96)||(2571267-2571316)
chr3 (47-96)||(12515604-12515653)
chr3 (4-96)||(30214098-30214189)
chr3 (9-92)||(37444149-37444231)
chr3 (47-96)||(10307765-10307814)
chr3 (34-78)||(35094972-35095016)
[»] chr6 (14 HSPs)
chr6 (1-95)||(5362977-5363071)
chr6 (1-93)||(2830765-2830857)
chr6 (1-75)||(22974657-22974731)
chr6 (1-75)||(23813670-23813744)
chr6 (1-94)||(32615544-32615640)
chr6 (47-96)||(17552717-17552766)
chr6 (1-69)||(3850577-3850645)
chr6 (52-96)||(33017723-33017767)
chr6 (9-96)||(29863395-29863482)
chr6 (47-96)||(8977597-8977646)
chr6 (47-96)||(14228256-14228305)
chr6 (47-96)||(28943899-28943948)
chr6 (36-96)||(26602550-26602610)
chr6 (1-73)||(31069666-31069738)
[»] chr1 (11 HSPs)
chr1 (1-95)||(44918024-44918118)
chr1 (1-96)||(313748-313843)
chr1 (1-96)||(39150411-39150506)
chr1 (9-85)||(8062214-8062290)
chr1 (1-96)||(17919452-17919547)
chr1 (17-96)||(51382370-51382449)
chr1 (47-96)||(1502850-1502899)
chr1 (1-93)||(32716247-32716339)
chr1 (9-96)||(23591696-23591783)
chr1 (1-50)||(6570069-6570118)
chr1 (47-96)||(23576544-23576593)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-96)||(13084-13179)
[»] chr4 (14 HSPs)
chr4 (1-96)||(49228355-49228450)
chr4 (1-95)||(10389352-10389446)
chr4 (1-79)||(36000024-36000102)
chr4 (1-96)||(7349687-7349782)
chr4 (9-96)||(49332331-49332418)
chr4 (1-93)||(23553571-23553664)
chr4 (10-79)||(29190909-29190978)
chr4 (47-96)||(50352301-50352350)
chr4 (47-95)||(9759272-9759320)
chr4 (38-96)||(40049557-40049615)
chr4 (46-96)||(48910964-48911014)
chr4 (34-95)||(49650210-49650271)
chr4 (1-57)||(41415641-41415697)
chr4 (1-61)||(48910886-48910946)
[»] scaffold0727 (1 HSPs)
scaffold0727 (1-93)||(5692-5785)
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-75)||(3497-3572)
[»] scaffold0009 (1 HSPs)
scaffold0009 (8-82)||(43476-43549)


Alignment Details
Target: chr8 (Bit Score: 96; Significance: 3e-47; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 35505509 - 35505406
Alignment:
Q  115 gactcttgtatttgaacaccatttattttgatacgtcgtttataaactcattttctctctgtatctttcatctcattgtatcatttacatacaatatcta 214  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35505509 gactctagtatttgaacaccatttattttgatgcgtcgtttataaactcattttctctctgtatctttcatctcattgtatcatttacatacaatatcta 35505410  T
Q  215 tcaa 218  Q
    ||||    
T  35505409 tcaa 35505406  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 7140543 - 7140638
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| ||||||||||||||| ||| | || ||| |||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  7140543 tatgtagtttttaatcaataattgttggttttcaataaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 7140638  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 10129197 - 10129102
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||||||||||||||||||| ||| | || |||||||| ||| || | |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  10129197 tatgtagcttttaatcaataattgttggttttcaatgaaaaattactaattttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 10129102  T

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Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 40210905 - 40211000
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| | |||||||||||||| ||| | || ||||||||||||||||| |||||||||| ||||| ||||||||||| ||||| ||||||||||    
T  40210905 tatgtaacatttaatcaataattgttggttttcaatgaaaagttaatacttttagttaccttaacatatgcaatattgcacatgttagacaaaccc 40211000  T

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Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 13328025 - 13328120
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| | |||||||||||||| ||| | || |||||||||||| |||| |||||||||| ||||| ||||||||||| ||||| ||||||||||    
T  13328025 tatgtaacatttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatatgcaatattgcacatgttagacaaaccc 13328120  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 19343921 - 19344016
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||| ||||||||| ||| | || |||||||||||| |||| || ||||||| ||||||||||||||||| ||||| ||||||||||    
T  19343921 tatgtaacttttactcaataattgttggttttcaatgaaaagttactacttttggttaccttaacatgtgcaatattgcacatgtaagacaaaccc 19344016  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 39701887 - 39701979
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    |||||| |||||||| | ||||| ||| | || || ||||||||| |||| |||||||||| ||||||||||||||||| ||||| |||||||    
T  39701887 tatgtaacttttaattagtaattgttggttttcaacgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaa 39701979  T

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Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 34 - 96
Target Start/End: Complemental strand, 38527881 - 38527819
Alignment:
Q  34 aatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||| |||| |||||| ||| ||||||||||||||||| ||||| ||||||||||    
T  38527881 aatgaaaagttattacttttagttgccttaacatgtgcaatattgcacatgttagacaaaccc 38527819  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 3306176 - 3306234
Alignment:
Q  38 aaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| ||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  3306176 aaaacttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 3306234  T

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Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 2161435 - 2161386
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  2161435 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 2161386  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 85
Target Start/End: Complemental strand, 9801755 - 9801678
Alignment:
Q  8 cttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgt 85  Q
    |||||||||||||||| ||||| || |||||||||||| |||| ||| |||| | || |||| ||||||||| |||||    
T  9801755 cttttaatcaataattgttgattttcaatgaaaagttactacttttaattactttaatatgtacaatattgcacatgt 9801678  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 35678367 - 35678452
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaac 94  Q
    ||||||| | ||||| ||| | || |||||||||||| |||| |||||| | | ||||||||||||||||| ||||| ||||||||    
T  35678367 ttttaataattaattgttggttttcaatgaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaac 35678452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 39703511 - 39703455
Alignment:
Q  37 gaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    ||||||||| |||| |||||||||| ||||||||||||||||| || || |||||||    
T  39703511 gaaaagttactacttttagttaccttaacatgtgcaatattgcacacgttagacaaa 39703455  T

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Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 14816218 - 14816305
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| | ||||| ||| | || ||| |||||||| |||| |||||| | | ||||||||||||||||| ||||| ||||||||||    
T  14816218 ttttaataattaattgttggttttcaataaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaaccc 14816305  T

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Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 14829522 - 14829435
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| | ||||| ||| | || ||| |||||||| |||| |||||| | | ||||||||||||||||| ||||| ||||||||||    
T  14829522 ttttaataattaattgttggttttcaataaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaaccc 14829435  T

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Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 4080511 - 4080573
Alignment:
Q  34 aatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||| |||| ||| || ||| ||||||||||||||| | ||||| ||||||||||    
T  4080511 aatgaaaagttactacttttactttccttaacatgtgcaatattacacatgttagacaaaccc 4080573  T

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Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 4084660 - 4084722
Alignment:
Q  34 aatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||| |||| ||| || ||| ||||||||||||||| | ||||| ||||||||||    
T  4084660 aatgaaaagttactacttttactttccttaacatgtgcaatattacacatgttagacaaaccc 4084722  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 4102967 - 4103029
Alignment:
Q  34 aatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||| |||| ||| || ||| ||||||||||||||| | ||||| ||||||||||    
T  4102967 aatgaaaagttactacttttactttccttaacatgtgcaatattacacatgttagacaaaccc 4103029  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 39904133 - 39904227
Alignment:
Q  2 atgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||||||||||||| ||||| || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  39904133 atgtagcttttaatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 39904227  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 12016760 - 12016665
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||||||||||||||||||| ||| | || ||| |||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  12016760 tatgtagcttttaatcaataattgttggttttcaataaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 12016665  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 16126643 - 16126738
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||||||||||||||||||| ||| | || |||||||| ||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  16126643 tatgtagcttttaatcaataattgttggttttcaatgaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 16126738  T

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Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 19228519 - 19228424
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||||||||||| ||| | || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  19228519 tatgtaacttttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 19228424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 10690876 - 10690781
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||||||||||||||||||| ||| | || |||||||| ||| || | ||||||| || ||||||||||||||||| ||||| ||||||||||    
T  10690876 tatgtagcttttaatcaataattgttggtttttaatgaaaaattactaattttagttaacttaacatgtgcaatattgcacatgttagacaaaccc 10690781  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 16919238 - 16919333
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||||||||||| ||| | || ||  |||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  16919238 tatgtaacttttaatcaataattgttggttttcaacaaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 16919333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 22705548 - 22705453
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||| ||| ||||||| ||| | || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  22705548 tatgtaactttaaattaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 22705453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 27665128 - 27665223
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||| ||||||| ||| | || |||||||||||| |||| |||||| ||| ||||||||||||||||| ||||| ||||||||||    
T  27665128 tatgtaacttttaataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaaaccc 27665223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 26229938 - 26230032
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||||||||||| ||| | |||| | |||| ||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  26229938 tatgtaacttttaatcaataattgttggttttaa-taaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 26230032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 14377518 - 14377423
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||  ||||||| ||| | || ||| |||||||| |||| |||||| ||| ||||||||||||||||| | ||| ||||||||||    
T  14377518 tatgtaacttttaacaaataattgttggttttcaataaaaagttactacttttagttgccttaacatgtgcaatattgcacgtgttagacaaaccc 14377423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 5583688 - 5583737
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  5583688 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 5583737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 15411706 - 15411802
Alignment:
Q  1 tatgtagctttt-aatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||| ||| ||| ||| ||| | || ||| |||| ||| |||| |||||||| | ||||||||||||||||| ||||| ||||||||||    
T  15411706 tatgtagctttttaataaattattgttgtttttcaataaaaaattactacttttagttactttaacatgtgcaatattgcacatgttagacaaaccc 15411802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 13351295 - 13351374
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaa-tactgttagttacctgaacatgtgcaatattgc 79  Q
    |||||| |||||||| ||||||| ||||| || ||| ||||  ||| |||| |||||||||| |||||||||||||||||    
T  13351295 tatgtaacttttaattaataattgttgattttcaataaaaaaataactacttttagttaccttaacatgtgcaatattgc 13351374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 16123372 - 16123294
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgc 79  Q
    |||||| | ||||||||| |||| ||  | || |||||||||||| | || |||||||||| |||||||||||||||||    
T  16123372 tatgtaacatttaatcaacaattgtttgttttcaatgaaaagttacttcttttagttaccttaacatgtgcaatattgc 16123294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 3561962 - 3562054
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    ||||||||||||||||||||||||||||| || |||||||||||| | || |||||||||| ||||||||||||||||| ||||| |||||||    
T  3561962 tatgtagcttttaatcaataattattgattttcaatgaaaagttactgcttttagttaccttaacatgtgcaatattgcacatgttagacaaa 3562054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 39757194 - 39757287
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaac 94  Q
    ||||||||||||||||||||||| ||||| || |||||||| ||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||    
T  39757194 tatgtagcttttaatcaataattgttgattttcaatgaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 39757287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 9332055 - 9331960
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| | |||||||||||||| ||||| || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  9332055 tatgtaacatttaatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 9331960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 24250407 - 24250312
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||||||||||| ||||||| ||| | || ||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| ||||||||||    
T  24250407 tatgtagcttttaataaataattgttggttttcaatgaaaagttaatacttttagtttccttaacatgtgcaatattgcacatgttagacaaaccc 24250312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 19889434 - 19889339
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||| ||||||| ||| | || |||||||||||| |||| |||||| ||| ||||||||||||||||| ||||| ||||||||||    
T  19889434 tatgtaacttttaataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaaaccc 19889339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 5909366 - 5909461
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||||||||||| ||||||| ||| | || |||||||||||| | || |||||| ||| ||||||||||||||||| ||||| || |||||||    
T  5909366 tatgtagcttttaataaataattgttggttttcaatgaaaagttactgcttttagttgccttaacatgtgcaatattgcacatgttagtcaaaccc 5909461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 47120278 - 47120373
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| | |||||||||||||| ||| | || |||||||| ||| |||| |||||||||  ||||||||||||||||| ||||| ||||||||||    
T  47120278 tatgtaacatttaatcaataattgttggttttcaatgaaaaattactacttttagttaccataacatgtgcaatattgcacatgttagacaaaccc 47120373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 12086022 - 12086109
Alignment:
Q  8 cttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    |||||||| ||||||| ||||| || || ||||||||| |||| |||||| ||| ||||||||||||||| | ||||| |||||||||    
T  12086022 cttttaataaataattgttgattttcaacgaaaagttactacttttagttgccttaacatgtgcaatattacacatgttagacaaacc 12086109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 384514 - 384571
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagtta 58  Q
    ||||||||||||||||||||||| ||||| || |||||||||||| |||| |||||||    
T  384514 tatgtagcttttaatcaataattgttgattttcaatgaaaagttactacttttagtta 384571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 36548553 - 36548636
Alignment:
Q  10 tttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    |||||||||||||| ||| | || ||| |||| ||| |||| |||||| ||| ||||||||||||||||| ||||| |||||||    
T  36548553 tttaatcaataattgttggttttcaataaaaaattactacttttagttcccttaacatgtgcaatattgcacatgttagacaaa 36548636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 33343036 - 33342987
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  33343036 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 33342987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 34270308 - 34270264
Alignment:
Q  52 ttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  34270308 ttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 34270264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 23982848 - 23982935
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| | ||||| ||| | || |||||||||||| |||| |||||| ||| |||||||  |||||||| ||||| ||||||||||    
T  23982848 ttttaataattaattgttggttttgaatgaaaagttactacttttagttgccttaacatgtataatattgcacatgttagacaaaccc 23982935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 46290058 - 46290009
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| |||||||||||| |||| ||||| ||||||||||    
T  46290058 tacttttagttaccttaacatgtgcaattttgcacatgttagacaaaccc 46290009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 19868174 - 19868114
Alignment:
Q  34 aatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaac 94  Q
    |||||||| ||| |||| ||||||  || ||||||||||||||||| ||||| ||||||||    
T  19868174 aatgaaaatttactacttttagttgtcttaacatgtgcaatattgcacatgttagacaaac 19868114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 52863 - 52958
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||||||||||| ||| | || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  52863 tatgtaacttttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 52958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 145771 - 145676
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||||||||||| ||| | || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  145771 tatgtaacttttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 145676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 2795617 - 2795522
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||||||||||| ||| | || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  2795617 tatgtaacttttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 2795522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 9184301 - 9184209
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    ||||||| ||||||||||||||||||| | || |||||||||||| |||| |||||||||| ||||||||||||||| | ||||| |||||||    
T  9184301 tatgtagtttttaatcaataattattggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattacacatgttagacaaa 9184209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 34578105 - 34578010
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||||||||| |||| ||||| || |||||||| ||| |||| |||||||||| |||||||| |||||||| ||||| ||||||||||    
T  34578105 tatgtagcttttaatcaacaattgttgattttcaatgaaaaattattacttttagttaccttaacatgtggaatattgcacatgttagacaaaccc 34578010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 30328411 - 30328506
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||||||||||||||||||| ||| | || |||||||| | | |||| ||||||| || ||||||||||||||||| ||||| ||||||||||    
T  30328411 tatgtagcttttaatcaataattgttggtttttaatgaaaaatgactacttttagttatcttaacatgtgcaatattgcacatgttagacaaaccc 30328506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 11376053 - 11375975
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgc 79  Q
    ||||||||||||||| ||||||||||||| || |||||||||||| |||| |||||| | | |||||||||||||||||    
T  11376053 tatgtagcttttaataaataattattgattttcaatgaaaagttactacttttagttgctttaacatgtgcaatattgc 11375975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 4047506 - 4047429
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattg 78  Q
    |||||||||||||||||| |||| ||| | || |||||||||||| |||| |||||||||| ||||| ||||||||||    
T  4047506 tatgtagcttttaatcaacaattgttggttttcaatgaaaagttactacttttagttaccttaacatatgcaatattg 4047429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 15190966 - 15190871
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||||||||||| ||  | || |||||||| ||| |||| ||| |||||| ||||| ||||||||||| ||||| ||||||||||    
T  15190966 tatgtaacttttaatcaataattgtttgttttcaatgaaaaattactacttttacttaccttaacatatgcaatattgcacatgttagacaaaccc 15190871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 10665058 - 10665144
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| |||||||| | || || |||||||||||| |||| |||||||||| ||||||||||||||| | |||||  |||||||||    
T  10665058 ttttaataaataattaat-attttcaatgaaaagttattacttttagttaccttaacatgtgcaatattacacatgttggacaaaccc 10665144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 11636817 - 11636730
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| | ||||| ||| | || |||||||||||| |||| |||||| | | ||||||||||||||||| ||||| ||||||||||    
T  11636817 ttttaataattaattgttggttttcaatgaaaagttactacttttagtttctttaacatgtgcaatattgcacatgttagacaaaccc 11636730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 30839829 - 30839780
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  30839829 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 30839780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 36597627 - 36597578
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  36597627 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 36597578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 31366073 - 31366131
Alignment:
Q  38 aaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||| |||  |||| ||||| ||||||||||||||||| ||||| ||||||||||    
T  31366073 aaaagttactacatttagctaccttaacatgtgcaatattgcacatgttagacaaaccc 31366131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 40512993 - 40512951
Alignment:
Q  53 tagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||    
T  40512993 tagttaccttaacatgtgcaatattgcacatgttagacaaacc 40512951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28629972 - 28629895
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattg 78  Q
    |||||| |||||||| ||||||| ||| | || |||||||||||| || | |||||| | | ||||||||||||||||    
T  28629972 tatgtaacttttaataaataattgttggttttcaatgaaaagttattatttttagttgctttaacatgtgcaatattg 28629895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 3863423 - 3863328
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||||||||||||||  |||| || |||||||||||| |||  |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  3863423 tatgtagcttttaatcaataattgctgattttcaatgaaaagttactacctttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 3863328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 11611008 - 11610913
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||| ||||||| ||| | || |||||||||||| |||| |||||| ||| ||||||||||||||||| ||||| ||||||||||    
T  11611008 tatgtaacttttaataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaaaccc 11610913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 51339271 - 51339360
Alignment:
Q  4 gtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    |||||||||||||||||||| ||| | || |||||||| ||| || | |||||||||| ||||||||||||||||| ||||| |||||||    
T  51339271 gtagcttttaatcaataattgttggttttcaatgaaaaattactatttttagttaccttaacatgtgcaatattgcacatgttagacaaa 51339360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 20938142 - 20938057
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaac 94  Q
    ||||||||||||||| ||  | || ||| |||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||    
T  20938142 ttttaatcaataattgttagttttcaataaaaagttattacttttagttaccttaacatgtgcaatattgcacatgttagacaaac 20938057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 32553444 - 32553366
Alignment:
Q  17 aataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    ||||||||||||| || |||||||||||| |||| ||| |||||| |||||||| |||||||| ||||| ||| |||||    
T  32553444 aataattattgattttcaatgaaaagttactacttttaattaccttaacatgtgtaatattgcacatgttagataaacc 32553366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 50364284 - 50364190
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    |||||| |||||||||||||||| ||| | || ||| | |||||| |||| ||||||||||  |||||||||||| ||| ||||| |||||||||    
T  50364284 tatgtaacttttaatcaataattgttggttttcaattataagttactacttttagttacctttacatgtgcaatactgcacatgttagacaaacc 50364190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 54621302 - 54621394
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    |||||| | |||||||||||||| ||| | || |||||||| ||| |||| ||| |||||| ||||| ||||||||||| ||||| |||||||    
T  54621302 tatgtaacatttaatcaataattgttggtttttaatgaaaaattactacttttaattaccttaacatatgcaatattgcacatgttagacaaa 54621394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 13495379 - 13495292
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| ||||||| ||||| || ||| |||| ||| |||| |||||||||| |||||||||||  |||| ||||| ||||||||||    
T  13495379 ttttaataaataattgttgattttcaataaaaaattactacttttagttaccttaacatgtgcaaatttgcacatgttagacaaaccc 13495292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 2571316 - 2571267
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  2571316 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 2571267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 12515604 - 12515653
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  12515604 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 12515653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 30214098 - 30214189
Alignment:
Q  4 gtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||| ||||||| ||||| || |||||||||||| || | |||||| ||| |  ||||| |||||||| ||||| ||||||||||    
T  30214098 gtagcttttaataaataattgttgattttcaatgaaaagttacta-ttttagttgccttagaatgtgtaatattgcacatgttagacaaaccc 30214189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 37444231 - 37444149
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaa 92  Q
    ||||||| | ||||| ||||| || ||| |||||||| |||| |||||| ||| ||||||||||||||||| ||||| ||||||    
T  37444231 ttttaataattaattgttgat-ttcaataaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaa 37444149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 10307814 - 10307765
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| | ||||||||||||||| ||||| ||||||||||    
T  10307814 tacttttagttaccttatcatgtgcaatattgcacatgttagacaaaccc 10307765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 35095016 - 35094972
Alignment:
Q  34 aatgaaaagttaatactgttagttacctgaacatgtgcaatattg 78  Q
    |||||||||||| | || |||||||||| ||||||||||||||||    
T  35095016 aatgaaaagttactgcttttagttaccttaacatgtgcaatattg 35094972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 5362977 - 5363071
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    |||||||||||||||||| |||| ||| | || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| |||||||||    
T  5362977 tatgtagcttttaatcaacaattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaacc 5363071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 2830765 - 2830857
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    ||||||||||||||||||||||| ||| | || |||||||||||| |||| |||||||||| ||||||||||||| ||  ||||| |||||||    
T  2830765 tatgtagcttttaatcaataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatactgtacatgttagacaaa 2830857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 22974657 - 22974731
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaata 75  Q
    |||||| |||||||||||||||| ||||| || |||||||||||| |||| |||||||||| |||||||||||||    
T  22974657 tatgtaacttttaatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgtgcaata 22974731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23813744 - 23813670
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaata 75  Q
    |||||| |||||||||||||||| ||||| || |||||||||||| |||| |||||||||| |||||||||||||    
T  23813744 tatgtaacttttaatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgtgcaata 23813670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 32615544 - 32615640
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagt---taatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaac 94  Q
    |||||||||||||||||||||||  |||| || ||||||||||   || |||| |||||||||| ||||| ||||||||| | ||||| | ||||||    
T  32615544 tatgtagcttttaatcaataattgatgattttcaatgaaaagttactagtacttttagttaccttaacatatgcaatattacacatgttaaacaaac 32615640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 17552717 - 17552766
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  17552717 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 17552766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3850645 - 3850577
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgt 69  Q
    |||||| |||||||| ||||||||||||| || |||||||||||  |||| |||||| ||| |||||||    
T  3850645 tatgtaacttttaatgaataattattgattttcaatgaaaagttgctacttttagttgccttaacatgt 3850577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 33017767 - 33017723
Alignment:
Q  52 ttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  33017767 ttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 33017723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Original strand, 29863395 - 29863482
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| ||||||||||  | || |||| ||||||| || | |||||| | | ||||||||||||||||| ||||| ||||||||||    
T  29863395 ttttaataaataattattctttttcaatgtaaagttactatttttagttcctttaacatgtgcaatattgcacatgttagacaaaccc 29863482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 8977597 - 8977646
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||| ||| ||||||||||||||||| ||||| ||||||||||    
T  8977597 tacttttagtttccttaacatgtgcaatattgcacatgttagacaaaccc 8977646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 14228256 - 14228305
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| ||| |||||| ||||||||||||||||| ||||| ||||||||||    
T  14228256 tacttttaattaccttaacatgtgcaatattgcacatgttagacaaaccc 14228305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 28943899 - 28943948
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| ||| |||||| ||||||||||||||||| ||||| ||||||||||    
T  28943899 tacttttaattaccttaacatgtgcaatattgcacatgttagacaaaccc 28943948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 26602550 - 26602610
Alignment:
Q  36 tgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| ||| |||| |||||| ||| || |||||||||||||| ||||| ||||||||||    
T  26602550 tgaaaaattactacttttagtttccttaatatgtgcaatattgcacatgttagacaaaccc 26602610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 31069666 - 31069738
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaa 73  Q
    |||||| | |||||||||||||| ||| | || ||| |||| ||| |||| |||||||||| |||||||||||    
T  31069666 tatgtaacatttaatcaataattgttggttttcaataaaaacttactacttttagttaccttaacatgtgcaa 31069738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 44918118 - 44918024
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    ||||||||||||||||||||||| ||||| || ||| |||| ||| |||| |||||||||| ||||||||||||||||| ||||| |||||||||    
T  44918118 tatgtagcttttaatcaataattgttgattttcaataaaaatttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaacc 44918024  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 313843 - 313748
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||||||||||||||||||| ||| | || ||| |||| ||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  313843 tatgtagcttttaatcaataattgttggttttcaatcaaaaattactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 313748  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 39150411 - 39150506
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||| ||||||| ||| | || |||||||||||| |||| |||||| ||| ||||||||||||||||| ||||| ||||||||||    
T  39150411 tatgtaacttttaataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtgcaatattgcacatgttagacaaaccc 39150506  T

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Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 8062290 - 8062214
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgt 85  Q
    ||||||||||||||| ||||| || |||||||||||| |||| |||||||||| ||||||| ||||||||| |||||    
T  8062290 ttttaatcaataattgttgattttcaatgaaaagttactacttttagttaccttaacatgttcaatattgcacatgt 8062214  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 17919547 - 17919452
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||| ||||||| ||| | || |||||||||||| |||| |||||| ||| ||||||| ||||||||| ||||| ||||||||||    
T  17919547 tatgtaacttttaataaataattgttggttttcaatgaaaagttactacttttagttgccttaacatgtacaatattgcacatgttagacaaaccc 17919452  T

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Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 51382449 - 51382370
Alignment:
Q  17 aataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| ||| | || |||||||||||| |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  51382449 aataattgttggttttcaatgaaaagttactacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 51382370  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 1502850 - 1502899
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  1502850 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 1502899  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 32716247 - 32716339
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    |||||| | |||||||||||||| ||  | || || ||||||||| | |  |||||||||| ||||||||||||||||| ||||| |||||||    
T  32716247 tatgtaacatttaatcaataattgtttgttttcaacgaaaagttacttcatttagttaccttaacatgtgcaatattgcacatgttagacaaa 32716339  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 23591783 - 23591696
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| ||||||||||||| || ||| |||| ||| || | |||||| | | |||||||||||| |||| ||||| ||||||||||    
T  23591783 ttttaataaataattattgattttcaataaaaacttactaattttagttgctttaacatgtgcaatgttgcacatgttagacaaaccc 23591696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6570069 - 6570118
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatact 50  Q
    ||||||||||||||||||||||| ||| | || |||||||||||| ||||    
T  6570069 tatgtagcttttaatcaataattgttggttttcaatgaaaagttagtact 6570118  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 23576544 - 23576593
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| |||||||||||||||||  |||| ||||||||||    
T  23576544 tacttttagttaccttaacatgtgcaatattgcagatgttagacaaaccc 23576593  T

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Target: scaffold0011 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 13179 - 13084
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||||||||||||||| |||| ||| | || |||||||| ||| |||| |||||||||| ||||| ||||||||||| ||||| ||||||||||    
T  13179 tatgtagcttttaatcaacaattgttggttttcaatgaaaaattactacttttagttaccttaacatatgcaatattgcacatgttagacaaaccc 13084  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 49228450 - 49228355
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| | ||||||||| |||| ||| | || |||||||||||| |||| |||||||||| ||||| ||||||||||| ||||| ||||||||||    
T  49228450 tatgtaacatttaatcaacaattgttggttttcaatgaaaagttactacttttagttaccttaacatatgcaatattgcacatgttagacaaaccc 49228355  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 10389352 - 10389446
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    |||||| |||||||||||||||| ||| | || ||| ||||||||||||| ||||||||   |||||||| |||||||| ||||| |||||||||    
T  10389352 tatgtaacttttaatcaataattgttggttttcaattaaaagttaatacttttagttactataacatgtgtaatattgcacatgttagacaaacc 10389446  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 36000024 - 36000102
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgc 79  Q
    ||||||||||||||||||||||| ||| | || ||| |||||||| |||| |||||||||| ||||||| |||||||||    
T  36000024 tatgtagcttttaatcaataattgttggttttcaataaaaagttactacttttagttaccttaacatgtacaatattgc 36000102  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7349782 - 7349687
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||||| |||||||  ||||||| ||| | || |||||||||||| |||| |||||| ||| ||||||||||||||||| | ||| ||||||||||    
T  7349782 tatgtaacttttaacaaataattgttggttttcaatgaaaagttattacttttagttgccttaacatgtgcaatattgcacgtgttagacaaaccc 7349687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 96
Target Start/End: Complemental strand, 49332418 - 49332331
Alignment:
Q  9 ttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||||| |||||||| |  | || |||||||||||| |||| ||| |||||| |||||||| |||||||| ||||| ||||||||||    
T  49332418 ttttaataaataattaatatttttcaatgaaaagttattacttttaattaccttaacatgtgaaatattgcacatgttagacaaaccc 49332331  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 23553664 - 23553571
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaag-ttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    ||||||| ||||||||||||||| ||| | || ||| ||||  ||| || | |||||||||| ||||||||||||||||| ||||| |||||||    
T  23553664 tatgtagtttttaatcaataattgttggttttcaataaaaaaattactatttttagttaccttaacatgtgcaatattgcacatgttagacaaa 23553571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 29190909 - 29190978
Alignment:
Q  10 tttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgc 79  Q
    |||||||||||||| ||| | || |||||||| ||| |||| |||||||||| ||||| |||||||||||    
T  29190909 tttaatcaataattgttggttttcaatgaaaaattactacttttagttaccttaacatatgcaatattgc 29190978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 50352350 - 50352301
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| |||||||||| ||||||||||||||||| ||||| ||||||||||    
T  50352350 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaaccc 50352301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 9759272 - 9759320
Alignment:
Q  47 tactgttagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    |||| |||||||||| ||||||||||||||||| ||||| |||||||||    
T  9759272 tacttttagttaccttaacatgtgcaatattgcacatgttagacaaacc 9759320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 40049615 - 40049557
Alignment:
Q  38 aaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    |||| ||| |||| |||||||| | ||||||||||||||||| ||||| ||||||||||    
T  40049615 aaaacttactacttttagttactttaacatgtgcaatattgcacatgttagacaaaccc 40049557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 96
Target Start/End: Original strand, 48910964 - 48911014
Alignment:
Q  46 atactgttagttacctgaacatgtgcaatattgctcatgtgagacaaaccc 96  Q
    ||||| ||||||| || ||||||||||||||||| ||||| ||||||||||    
T  48910964 atacttttagttatcttaacatgtgcaatattgcacatgttagacaaaccc 48911014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 49650271 - 49650210
Alignment:
Q  34 aatgaaaagttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaacc 95  Q
    |||||||||||| | || |||||||||| || |||||||||||||| || || |||||||||    
T  49650271 aatgaaaagttacttcttttagttaccttaatatgtgcaatattgcacaggttagacaaacc 49650210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41415641 - 41415697
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagtt 57  Q
    ||||||||||||||| ||||||| ||||| || ||| |||||||| |||| ||||||    
T  41415641 tatgtagcttttaataaataattgttgattttcaattaaaagttactacttttagtt 41415697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 48910886 - 48910946
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacct 61  Q
    ||||||||||||||||||||||| || || || ||| |||| ||| |||| ||||||||||    
T  48910886 tatgtagcttttaatcaataattgttaattttcaataaaaaattactacttttagttacct 48910946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0727 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5785 - 5692
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaag-ttaatactgttagttacctgaacatgtgcaatattgctcatgtgagacaaa 93  Q
    ||||||| ||||||||||||||| ||| | || ||| ||||  ||| || | |||||||||| ||||||||||||||||| ||||| |||||||    
T  5785 tatgtagtttttaatcaataattgttggttttcaataaaaaaattactatttttagttaccttaacatgtgcaatattgcacatgttagacaaa 5692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 3497 - 3572
Alignment:
Q  1 tatgtagcttttaatcaataattattgatgttaaatgaaaa-gttaatactgttagttacctgaacatgtgcaata 75  Q
    |||||| |||||||||||||||| ||| | || |||||||| |||| |||| |||||||| | |||||||||||||    
T  3497 tatgtaacttttaatcaataattgttggtttttaatgaaaaagttactacttttagttacattaacatgtgcaata 3572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Complemental strand, 43549 - 43476
Alignment:
Q  8 cttttaatcaataattattgatgttaaatgaaaagttaatactgttagttacctgaacatgtgcaatattgctca 82  Q
    |||||||| ||||||| ||||| || |||||||| ||| |||| ||| |||||| |||| |||||||||||||||    
T  43549 cttttaattaataattgttgattttcaatgaaaaattactactttta-ttaccttaacacgtgcaatattgctca 43476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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