View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_high_27 (Length: 237)
Name: NF5022_high_27
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_high_27 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 32667354 - 32667156
Alignment:
| Q |
15 |
catcatcatagcaggaatgggacttttcactgactcttatgacctcttctccatcacactcatcacaaagatgctaggaagaatatactactctgaccac |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32667354 |
catcatcatagcaggaatgggacttttcactgactcttatgaccttttttccatcacactcatcacaaagatgctaggaagaatatactactccgaccac |
32667255 |
T |
|
| Q |
115 |
caagaaatccgtcaagtcaacccggtcgtggtctcagctcttgtctccgtcgcactcctaggaaccgccttcggtcagctcctattcggacgcctcgga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667254 |
caagaaatccgtcaagtcaacccggtcgtggtctcagcccttgtctccgttgcactcctaggaaccgccttcggtcagctcctattcggacgcctcgga |
32667156 |
T |
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