View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_high_29 (Length: 235)
Name: NF5022_high_29
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 4115098 - 4115309
Alignment:
| Q |
1 |
gagcaaaattttagcaggaatccttgcaatcaggcaacttgagactcataaaaaatcggatatgaccaaattttaagtttaagattagatttaagattca |
100 |
Q |
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| T |
4115098 |
gagcaaaattttagcaggaatccttgcaatcaggcaacttgagactcataaaaaatcggatatgaccaaattttaagtttaagattg------------a |
4115185 |
T |
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| Q |
101 |
acatagttgatggtgtgtcgttgccgttgacctgtcaagtgtgagtaaatgactttcatgttagatataaatgaacatgaacatcatataagtaaggtga |
200 |
Q |
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||||||||| ||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4115186 |
acatagttggtggtgtgtcattgccgttgatgtgtcaagtgtgagtaaataactttcatgttagatataaacgaacatgaacatcatataagtaaggtga |
4115285 |
T |
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| Q |
201 |
ctacatatttttggtgaggcctat |
224 |
Q |
| |
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||||||||||||| |||| ||||| |
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| T |
4115286 |
ctacatatttttgttgagacctat |
4115309 |
T |
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