View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_high_4 (Length: 614)
Name: NF5022_high_4
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 349 - 596
Target Start/End: Original strand, 8878906 - 8879155
Alignment:
| Q |
349 |
gatcataacaactatcaattcttcacacatcctcaagacataattcaagtggttgagctaaacccctaaaagaatttgaaaatgaggccgtagttcaaat |
448 |
Q |
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| T |
8878906 |
gatcataacaactatcaattgttcacacatcctcaagacataattcaagtggttgagctaaacccctaaaagaatttgaaaatgaggccgtagttcaaat |
8879005 |
T |
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| Q |
449 |
gatggttacaaaactaacattttataatttttaaatggtgacaattattttgtatataaatgctcaaatgcagaaatatacaaccgatgatacatatata |
548 |
Q |
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| T |
8879006 |
gatggttgcaaaactaacattttataaatttaaaatggtgacaattattttgtatataaatgctcaaatgcagaaatatacaaccgatgatacatatata |
8879105 |
T |
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| Q |
549 |
aaat--tgagtcccaatcccaaacaaacaacaagtcatttgcacaatttg |
596 |
Q |
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| T |
8879106 |
aaattgtgagtcccaatcccaaacaaacaacaagtcatttgcacaatttg |
8879155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 317
Target Start/End: Original strand, 8878564 - 8878874
Alignment:
| Q |
13 |
aatatggtgttaaattgggtccatataatactgtaagtttctgggagtgagaatggtttatgtcctacacgaaaccttagccactcttgctttga--atg |
110 |
Q |
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| T |
8878564 |
aatatggtgttaaattgggtccatataatactgtaagtttctgggagtgagaatggtttatgtcctacacgaaaccttagccactcttgctttgaatatg |
8878663 |
T |
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| Q |
111 |
ctgaacctgaaccaaaaatggtttacctgcttttttatatgcatagcttgttccttcacatgatacgcgtaacgcttttaatccctttttggactgttcc |
210 |
Q |
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| T |
8878664 |
ctgaacctgaaccaaaaatggtttacctgcttttttatatgcatagcttgttccttcacatgct-------acgcttttaatccctttttggactgttcc |
8878756 |
T |
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| Q |
211 |
actta-----------aacatcaatgacaattgcatgcagtaatgtaaaccaaattttaagcctacaaatacattggaccaaccctaatttatnnnnnnn |
299 |
Q |
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| T |
8878757 |
acttaccacgttatggaacatcaatgacaattgcatgcagtaatgtaaaccaaattttaagcctacaaatacattggaccgaccctaatttataaaaaaa |
8878856 |
T |
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| Q |
300 |
ttatgtacctctacaaac |
317 |
Q |
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| T |
8878857 |
ttatgtacctctacaaac |
8878874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 408 - 541
Target Start/End: Original strand, 8882814 - 8882948
Alignment:
| Q |
408 |
aaacccctaaaagaatttgaaaatgagg-ccgtagttcaaatgatggttacaaaactaacattttataatttttaaatggtgacaattattttgtatata |
506 |
Q |
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| T |
8882814 |
aaacacctaaaagaatttgaaaataagctccatagttcaaatgatggttataaaactaaatttttttatatctaaaatggtgacaattattttgtataga |
8882913 |
T |
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| Q |
507 |
aatgctcaaatgcagaaatatacaaccgatgatac |
541 |
Q |
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| T |
8882914 |
aatgttcaaatgtaagaatatacagcggatgatac |
8882948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 8863235 - 8863156
Alignment:
| Q |
13 |
aatatggtgttaaattgggtccatataatactgtaagtttctgggagtgagaatggtttatgtcctacacgaaaccttagcc |
94 |
Q |
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| T |
8863235 |
aatatggtgttaaattgtgtccatataatactgtaaatttccgg--gggggaatggtttgtgtcctacacaacaccttagcc |
8863156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 215
Target Start/End: Complemental strand, 8862973 - 8862894
Alignment:
| Q |
129 |
tggtttacctgcttttttatatgcatagcttgttccttcacatgatacgcgtaacgcttttaatccctttttggactgttccactta |
215 |
Q |
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| T |
8862973 |
tggtttatctgctttttgatatgcatggcttgttccttcacat-------gccacgcttttaagccctttttggactgttccactta |
8862894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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