View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_high_5 (Length: 596)
Name: NF5022_high_5
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 19 - 580
Target Start/End: Complemental strand, 31228989 - 31228425
Alignment:
| Q |
19 |
ccgaggacttatgccatgatatcttggagtatattatggaagaaaaggaatgtacttatgtgcaactgtgggataatataaatgagactgtggaccatgt |
118 |
Q |
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| T |
31228989 |
ccgaggacttatgccatgatatcttggagtatattatggaagaaaaggaacatacttatgtgcaactgtgggataatataaatgagactgtggaccatgt |
31228890 |
T |
|
| Q |
119 |
tgtgaaccgattcagtgttgttctacatgtatggcagcagcacaggcagcgtgtatcagctggagcagaccagccagaagttcgcatgacagaaaattgg |
218 |
Q |
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| T |
31228889 |
tgtgaaccgatccagtgttgttctacatgtatggcagcagcacaggcagcgtgtatcagctggagcagaccagccagaagttcgcatgacagaaaattgg |
31228790 |
T |
|
| Q |
219 |
atacctctacctaccagttatgtaaaatgcagtctggatgctgcattttttgcggatgagcagtgtttatgtgttggcatgtgtgcaagggatgactatg |
318 |
Q |
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| T |
31228789 |
atacctctacctaccagttatgtaaaatgcagtctggatgctgcattttttgcggatgagcagtgtttatgtgttggcatgtgtgcaagggatgactatg |
31228690 |
T |
|
| Q |
319 |
gtaaattcattgtagccaaaacaaattggtgctccgcgagcgtgtagctgaaggtgaagcttgagctttaattcaatcaatggcatggatagaatcggcg |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | |
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| T |
31228689 |
gtaaattcattgtagccaaaacaaattggtgctccgcgagcgtgtagctgaaggtgaagcttgaggtttaattcaagcaatggcatggatagaatcggtg |
31228590 |
T |
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| Q |
419 |
ggattgcaaaatgtgattttcgagatgaatagcaaacaagtcgtgcatgacg-tgacaaagaaattcacaacagtttggtatacggtttgatcctaggca |
517 |
Q |
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||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31228589 |
ggactgcaaaatgtgattttcgagatgaatagcaaacaggtcgtgcatgacgctgacaaagaaattcacaacagtttggtatacggtttgatcctaggca |
31228490 |
T |
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| Q |
518 |
acaagcaaatagtagagttcacactctcaacacaagcttctctatct--tacgctcctcacacag |
580 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
31228489 |
acaagcaaatagtagagttcacactctcaacacaagcttctctatcttatatgctcctcacacag |
31228425 |
T |
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