View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5022_low_11 (Length: 369)
Name: NF5022_low_11
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_low_11 |
 | |
|
| [»] scaffold0133 (3 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0511 (1 HSPs) |
| | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0256 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0133 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 8249 - 8591
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8249 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacatgatagaatcaacctcaggcaaattccaaaa |
8348 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8349 |
ttcactttccagtacagaaatccattgatgttcgttgcttgtacagcacaaactgctacccaatactttagcagcaagaggtgaacccacacattttctc |
8448 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8449 |
actaactttttgcctattgccacaagctctgcacgctcttctcgattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
8548 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8549 |
ttgctaaatgatgagcatcagaagttcccatgatggatgcaac |
8591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 12591 - 12933
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||| ||| ||||||| |
|
|
| T |
12591 |
cagcacagaaagtaaaacatggcctcaatgacaatttcaagttaaaatagcttagtctcaaagcagacatgataggatcaacctcaggtaaactccaaaa |
12690 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12691 |
ctcactttctagtacagaaatccattgatgttcgtcacttgtaaagcacaaactgcttcctaatactttagcagcaagaggtgaacccacacattttctc |
12790 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12791 |
actaactttttgcctattgccacaagctctgcacgctcttctctatttgctacaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
12890 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12891 |
ttgctaaatgatgagcatcagaagttcccatgatggatgcaac |
12933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0133; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 305
Target Start/End: Original strand, 17805 - 18094
Alignment:
| Q |
16 |
aaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaactcacttt |
115 |
Q |
| |
|
|||| |||||| || ||||| ||| ||||||| ||||||||||||| ||||||||||||||| |||| | | |||||| |||||||||| |||||||| |
|
|
| T |
17805 |
aaagtaaaacagggcctcaaggacgatttcaaattaaagtagcttagtctcaaagcagacattatagggttatcctcagataaattccaaacctcacttt |
17904 |
T |
|
| Q |
116 |
ccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctcactaactt |
215 |
Q |
| |
|
|| |||||||| |||||||| ||| | ||| |||||| || | ||| ||||| || || |||||||||||||||||||| ||||||||||||| || |
|
|
| T |
17905 |
cctttacagaaagccattgatgttcctcacttttaaagcgcagaaggcttcccaaaaccttggcagcaagaggtgaacccacgcattttctcactatctc |
18004 |
T |
|
| Q |
216 |
tttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataa |
305 |
Q |
| |
|
|| |||||||| |||||||||| ||||| || | |||| ||||| ||| |||||||| || || ||||| |||||||||||| |||| |
|
|
| T |
18005 |
cttacctattgctgcaagctctgcgcgctcctccccatttggtccaacagcatgttgtttaaataatgaccaaatgtcatcatcatataa |
18094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 16796911 - 16797250
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||| ||| |||||||| ||| ||||||||||| |
|
|
| T |
16796911 |
cagcgcagaaagtaaaacatggcctcaatgacaatttcaagttaaagtagcttagtgtcaaagcagacatgatacgatcaacctgaggtaaattccaaaa |
16797010 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16797011 |
ttcactttccagtacagaaatccattgatgttcgtcgcttgtaaagcgcaaactgcttcccaatactttagcagcaagaggtgaacccacacattttctc |
16797110 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
16797111 |
actaacttcttgcctattgccacaagctctgcacgctcttctctatttgctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataacc |
16797210 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
|| ||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
16797211 |
gtgttaaatgatg---aacataagttcccatgatggatgcaac |
16797250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 16787709 - 16788051
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
|||| ||||| | ||||||||| ||||| ||||||||||||||||||||||||| ||||||| ||||||| |||| |||| |||||| ||||||||||| |
|
|
| T |
16787709 |
cagcgcagaaggtaaaacatggcctcaaggacaatttcaagttaaagtagcttagtctcaaaacagacatgataggatcatcctcagttaaattccaaaa |
16787808 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||| | ||||||||| ||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
16787809 |
ctcactttccagtacagaaatccattgatgttcgtcgcttgtaaatcgcaaactgcttcccaatactttagcagcaagagttgaacccacacattttctc |
16787908 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16787909 |
actaacttcttgcctatttccacaagctctgcacgttcttctctattttctctgaaagcttgttgtttgaacaaagaccagatgtcagaatcagataagc |
16788008 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
|| |||| ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
16788009 |
gtgttaaacgatgagcatgataagttgccatgatggatgcaac |
16788051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 17069251 - 17069590
Alignment:
| Q |
11 |
cacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaactc |
110 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||| | || | | || |||||||||||||| |
|
|
| T |
17069251 |
cacagaaagtaaaacatggcctcaatgacaatttcaagttatagtagcttagtctcaaagcagacatgacagggttctcatcgtctaaattccaaaactc |
17069350 |
T |
|
| Q |
111 |
actttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctcact |
210 |
Q |
| |
|
|||||||| |||||||||||||||| ||| | |||| |||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
17069351 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
17069450 |
T |
|
| Q |
211 |
aactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagcttg |
310 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
17069451 |
aacttttggcctatttccacaagctctgcacgcccttctctctttgctccaaaagcatgttgtttgaacaaagaccagatgtcatcatcagataaccgtg |
17069550 |
T |
|
| Q |
311 |
ctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
17069551 |
ataaaggatgagcatcatgagttcccatgatggatgcaac |
17069590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 16987196 - 16987538
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
|||||||||| | ||||||||| || | ||||||||||| ||| |||||||||| |||||||||||| || |||| |||| ||||||| |||||||||| |
|
|
| T |
16987196 |
cagcacagaaggtaaaacatggccttagtgacaatttcatgttgaagtagcttagtctcaaagcagaaatgataggatcatcctcaggtaaattccaaat |
16987295 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || | ||||||||| ||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
16987296 |
ctcactttccagtacagaaatccattgatgttcgtcagtttcacgttgcaaactgcttcccaatactttagcagcaagaggtgaacccacaaattttctc |
16987395 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|| ||||| || |||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16987396 |
accaacttcttacctatttccacaagctctgcacgctcttctccattttctccgaaagcttgttgtttgaacaaagaccagatgtgatcatcagataagc |
16987495 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
| ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
16987496 |
cgaccaaaggatgagcaggataagttcccatgatggatgcaac |
16987538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 16657754 - 16658093
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| | | | | | |||| ||||||||||| |
|
|
| T |
16657754 |
cagcacaaaaagtaaaacatggcctcaatgacaatttcaagttaaagtagctcagtctcaaagcagacatgacatggttatcatcagctaaattccaaaa |
16657853 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| | |||| |||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16657854 |
ctcactttccaccacagaaatccattgatgttcatcgcttttaaagcgtaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctc |
16657953 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||||||||| ||||||| ||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
16657954 |
actaacttttggcctatttccacaagatctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgaccagatgtcatcatcagataact |
16658053 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
||||||| |||| | | | ||||||||||||||||||||| |
|
|
| T |
16658054 |
gtgctaaaggatg---aaccttagttcccatgatggatgcaac |
16658093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 16868419 - 16868080
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| | | | | | || | ||||||||||| |
|
|
| T |
16868419 |
cagcacaaaaagtaaaacatggcctcaatgacaatttcaagttaaagtagctcagtctcaaagcagacatgacatggttatcatctgctaaattccaaaa |
16868320 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||| | |||| |||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
16868319 |
ctcactttccaccacagaagtccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctc |
16868220 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| || |||||||||||||||||||| |
|
|
| T |
16868219 |
actaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgatcagatgtcatcatcagataact |
16868120 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
||||||| |||| | | | ||||||||||||||||||||| |
|
|
| T |
16868119 |
gtgctaaaggatg---aaccttagttcccatgatggatgcaac |
16868080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 111 - 350
Target Start/End: Original strand, 16837525 - 16837761
Alignment:
| Q |
111 |
actttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctcact |
210 |
Q |
| |
|
|||||||| |||||||||||||||| ||| | |||| |||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
16837525 |
actttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctcact |
16837624 |
T |
|
| Q |
211 |
aactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagcttg |
310 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
16837625 |
aacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgaccagatgtcatcatcagataactgtg |
16837724 |
T |
|
| Q |
311 |
ctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
||||| |||| | | | ||||||||||||||||||||| |
|
|
| T |
16837725 |
ctaaaggatg---aaccttagttcccatgatggatgcaac |
16837761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 18806613 - 18806273
Alignment:
| Q |
10 |
gcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaact |
109 |
Q |
| |
|
||||| |||| |||||| | |||| ||| |||||||| ||||||||||| | ||||||| ||||||| |||| || |||| | || ||||||||| |
|
|
| T |
18806613 |
gcacaaaaagtaaaacacagcctcagtgataatttcaaattaaagtagctgagtctcaaaacagacatgataggattgtcctcggataagctccaaaact |
18806514 |
T |
|
| Q |
110 |
cactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctcac |
209 |
Q |
| |
|
||||||| |||||||| |||||||| ||| | || |||||| |||| ||| || | |||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
18806513 |
tactttcctttacagaaagccattgatgttcctcagttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggtgaacccacacattttctcac |
18806414 |
T |
|
| Q |
210 |
taactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagctt |
309 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||| |||||| ||||||| ||||||||||||||| | |
|
|
| T |
18806413 |
taactccttgcctattgccacaagctctgctcgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagattgcatcatcagataagcct |
18806314 |
T |
|
| Q |
310 |
gctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
18806313 |
aacaaatgatgagcaggataagttcccatgattgatgcaac |
18806273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 18873607 - 18873267
Alignment:
| Q |
10 |
gcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaact |
109 |
Q |
| |
|
||||| |||| |||||| | |||| ||| |||||||| ||||||||||| | |||||| ||||||| |||| || |||| | || ||||||||| |
|
|
| T |
18873607 |
gcacaaaaagtaaaacacagcctcagtgataatttcaaattaaagtagctgagtctcaatacagacatgataggattgtcctcggataagctccaaaact |
18873508 |
T |
|
| Q |
110 |
cactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctcac |
209 |
Q |
| |
|
||||||| |||||||| |||||||| ||| | || |||||| |||| ||| || | |||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
18873507 |
tactttcctttacagaaagccattgatgttcctcagttttaaagcgcaaaaggcttcctagtacttttgcggcaagaggagaacccacacattttctcac |
18873408 |
T |
|
| Q |
210 |
taactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagctt |
309 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||| |||||||| ||||||||||||||| | |
|
|
| T |
18873407 |
taactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatcagataagcct |
18873308 |
T |
|
| Q |
310 |
gctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
18873307 |
aacaaatgatgagcaggataagttcccatgattgatgcaac |
18873267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 16780841 - 16781183
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
||||||| |||| |||||| || || || ||||| ||||| ||||||||||||| ||||||||||||||| |||| | | |||||| || ||||||| |
|
|
| T |
16780841 |
cagcacaaaaagtaaaacacggccttaaggacaaattcaaattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataacttccaaag |
16780940 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||| | || |||||| |||| ||| ||||| || || |||||||| |||||||||||||||||| || |
|
|
| T |
16780941 |
ctcactttcctttacagaaagccattgatgttcctcatttttaaagcgcaaaaggcttcccaaaaccttggcagcaagtggtgaacccacacattttatc |
16781040 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||| || ||||||||||| ||||||||||| ||||||| | ||| ||||||||| |||||||| || || | ||| ||||| || ||| |||| | |
|
|
| T |
16781041 |
actatctccttgcctattgctgcaagctctgcaggctcttccccattaggtccaaaagcgtgttgtttaaataatgtccaaatgtcgtcgtcatataaac |
16781140 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
| | ||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
16781141 |
ctaccaaatggtgagcagggtgagttcccatgatggatgcaac |
16781183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 171 - 307
Target Start/End: Original strand, 16843708 - 16843844
Alignment:
| Q |
171 |
tactttcgcagcaagaggtgaacccacacattttctcactaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgt |
270 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||| |||| || || ||||||| ||||| |||||||| |||||||| | |||||||||| ||| |
|
|
| T |
16843708 |
tactttggcagcaagaggcgaacccacacattttctaactatctccttacctattgttacaaggtctgcacgttcttctctttcagctccaaaagcgtgt |
16843807 |
T |
|
| Q |
271 |
tgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
16843808 |
tgcttgaacaaagaccagatggaatcatcggataagc |
16843844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 37232 - 37571
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
||||||| |||| ||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| | | | | |||| ||||||||||| |
|
|
| T |
37232 |
cagcacaaaaagtaaaacatggcctcaatgacaatttcaagttaaagtagctcagtctcaaagcagacatgacttggttatcatcagctaaattccaaaa |
37331 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
||||||||||| |||||||||||||||| ||| | |||| |||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37332 |
ctcactttccaccacagaaatccattgatgttcatcgcttttaaagcgcaaaaggcttcccaatactttagcagcaagaggtgaacccacacattttctc |
37431 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
37432 |
actaacttttggcctatttccacaagctctgcacgcccttctctatttgctccaaaagcatgttgtttgaacaacgaccagatgtcatcatcagataact |
37531 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
||||||| |||| | | | ||||||||||||||||||||| |
|
|
| T |
37532 |
gtgctaaaggatg---aaccttagttcccatgatggatgcaac |
37571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 350
Target Start/End: Complemental strand, 38939778 - 38939436
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
||||||| ||| ||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||| |||| | | |||||| |||||||||| |
|
|
| T |
38939778 |
cagcacaaaaattaaaacatggcctcaaggacaatttcaaattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataaattccaaag |
38939679 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||| | ||| |||||| |||| ||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38939678 |
ctcactttcctttacagaaaaccattgatgttcctcacttttaaagcgcaaaaggcttcccaatactttggcagcaagaggtgaacccacacattttctc |
38939579 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||| || ||||||||||| |||||||||||| ||||||| | || | ||||||||| |||||||| || || ||||| ||||| |||||| |||| | |
|
|
| T |
38939578 |
actatctccttgcctattgctacaagctctgcatgctcttccccatctggtccaaaagcatgttgtttaaataatgaccaaatgtcgtcatcatataaac |
38939479 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
| | ||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
38939478 |
ctaccaaatggtgagcagggtgagttcccatgatggatgcaac |
38939436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 7053685 - 7053388
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
||||||| |||| |||||| || ||||||| ||||||||| ||| ||||||| | |||||||||||||| || | || | |||||| ||||||||||| |
|
|
| T |
7053685 |
cagcacaaaaagaaaaacaaggcctcaatggcaatttcaaattatagtagctcagcctcaaagcagacatgattggattatcctcagataaattccaaaa |
7053586 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
|| |||||| || ||||| |||||||| || | | | |||| | ||| ||| || |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
7053585 |
cttgctttcctttatagaaagccattgatgtttctcacgtttaaatcgtaaaaggcttcctaatacttttgctgcaagaggtgaacccacacattttctc |
7053486 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataa |
305 |
Q |
| |
|
|||| || |||||||||| ||||||||||| ||||||||| |||| |||||||| ||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
7053485 |
actatctccttgcctattgtggcaagctctgcatgctcttctccatttggtccaaaagtacagtgtttgaacaaaggccaaatgtcatcatcagataa |
7053388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 9097 - 9437
Alignment:
| Q |
10 |
gcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaact |
109 |
Q |
| |
|
||||| |||| |||||| || |||| ||| |||||||| ||||||||||| | ||||||| ||||||| |||| || |||| | || ||||||||| |
|
|
| T |
9097 |
gcacaaaaagtaaaacacggcctcagtgataatttcaaattaaagtagctgagtctcaaaacagacatgataggattgtcctcggataagctccaaaact |
9196 |
T |
|
| Q |
110 |
cactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctcac |
209 |
Q |
| |
|
||| ||| |||||||| |||||||| ||| | ||| |||||| |||| || || | |||||| || |||||||| |||||||||||||||||||| |
|
|
| T |
9197 |
tactgtcctttacagaaagccattgatgttcctcacttttaaagcgcaaaagacttcctagtactttggcggcaagaggcgaacccacacattttctcac |
9296 |
T |
|
| Q |
210 |
taactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagctt |
309 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||| |||||||| ||||||||||||||| | |
|
|
| T |
9297 |
taactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatcagataagcct |
9396 |
T |
|
| Q |
310 |
gctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
9397 |
aacaaatgatgagcaggataagttcccatgattgatgcaac |
9437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 13377833 - 13378175
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
||||||| |||| ||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||| |||| | | |||||| |||||||||| |
|
|
| T |
13377833 |
cagcacaaaaagtaaaacatggcctcaaggacaatttcaaattaaagtagcttagtctcaaagcagacatgatagggttatcctcagataaattccaaag |
13377932 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
|| ||||||| |||||||| |||||||| ||| | ||| |||||| | || ||| ||||| || || |||||||||||||||||||||||||||||| |
|
|
| T |
13377933 |
cttactttcctttacagaaagccattgatgttcctcacttttaaagcgcgaaaggcttcccaaaaccttggcagcaagaggtgaacccacacattttctc |
13378032 |
T |
|
| Q |
208 |
actaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagc |
307 |
Q |
| |
|
|||| || ||||||||||| ||||||||||||||||||| | ||| ||||| ||| ||| |||| ||||||||||| ||||| |||||| ||| | |
|
|
| T |
13378033 |
actatctccttgcctattgctgcaagctctgcacgctcttccccattaggtccaatagcatgtagtttaaacaaagaccaaatgtcttcatcatgtaatc |
13378132 |
T |
|
| Q |
308 |
ttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
| | |||||||||||| | ||||||||||||||||||||| |
|
|
| T |
13378133 |
ctaccaaatgatgagcagggtgagttcccatgatggatgcaac |
13378175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0230 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 10 - 350
Target Start/End: Original strand, 4416 - 4757
Alignment:
| Q |
10 |
gcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaact |
109 |
Q |
| |
|
||||| |||| |||||| || |||| ||| ||||| || ||||||||||| | ||||||| || |||| |||| || |||| | || ||||||||| |
|
|
| T |
4416 |
gcacaaaaagtaaaacacggcctcagtgataattttaaattaaagtagctgagtctcaaaacaaacatgataggattgtcctcggataagctccaaaact |
4515 |
T |
|
| Q |
110 |
cactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactg-ctacccaatactttcgcagcaagaggtgaacccacacattttctca |
208 |
Q |
| |
|
||||||| |||||||| |||||||| ||| | ||| |||||| |||| | || || | |||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
4516 |
tactttcctttacagaaagccattgatgttcctcacttttaaagcgcaaaaaggcttcctagtactttggcagcaagaggcgaacccacacattttctca |
4615 |
T |
|
| Q |
209 |
ctaactttttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagct |
308 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||| |||||| |||||||| ||||||||||||||| |
|
|
| T |
4616 |
ctaactccttgcctattgccacaagctctgcacgctcttctctatttgtttcaaaagctttttgtttaaacaaataccagatggcatcatcagataagcc |
4715 |
T |
|
| Q |
309 |
tgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
| |||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
4716 |
taacaaatgatgagcaggataagttcccatgattgatgcaac |
4757 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 8893 - 9111
Alignment:
| Q |
8 |
cagcacagaaagcaaaacatggtctcaatgacaatttcaagttaaagtagcttattctcaaagcagacataatagaatcaacctcaggcaaattccaaaa |
107 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||| |||| |||||| |||||||||| |
|
|
| T |
8893 |
cagcacaaaaagtaaaacatggtctcaaggacaatttcaaattaaagtagcttagtctcaaagcagacatgataggatcatcctcagttaaattccaaag |
8992 |
T |
|
| Q |
108 |
ctcactttccagtacagaaatccattgattttcgttgcttgtaaagcacaaactgctacccaatactttcgcagcaagaggtgaacccacacattttctc |
207 |
Q |
| |
|
|||||||||| ||||| | |||||||| ||| | ||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8993 |
ctcactttccttgacagagagccattgatgttcctcacttttaaagcacaaaagacttcccaatactttggcagcaagaggtgaacccacacattttctc |
9092 |
T |
|
| Q |
208 |
actaactttttgcctattg |
226 |
Q |
| |
|
|| | || |||||||||| |
|
|
| T |
9093 |
acaatctccttgcctattg |
9111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 350
Target Start/End: Original strand, 9136 - 9228
Alignment:
| Q |
258 |
tccaaaagcttgttgtttgaacaaagaccagatgtcatcatcagataagcttgctaaatgatgagcatcataagttcccatgatggatgcaac |
350 |
Q |
| |
|
||||||||| |||||||| || || ||||| ||||| |||||| |||| | | | ||||| |||||| | ||||||||||||||||||||| |
|
|
| T |
9136 |
tccaaaagcatgttgtttaaataatgaccaaatgtcgtcatcatataaacctaccaaatggtgagcagggtgagttcccatgatggatgcaac |
9228 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 30207085 - 30207146
Alignment:
| Q |
220 |
cctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaa |
281 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||| || | |||||||||||| |
|
|
| T |
30207085 |
cctatttccacaagctctgcacgctcttctctattttgtccaaatgcatattgtttgaacaa |
30207146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 7581265 - 7581201
Alignment:
| Q |
217 |
ttgcctattgccacaagctctgcacgctcttctctattttctccaaaagcttgttgtttgaacaa |
281 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| | |||||| || | |||||||||||| |
|
|
| T |
7581265 |
ttgcctattgccacaagctctgcactctcttctctatcatgtccaaatgcatattgtttgaacaa |
7581201 |
T |
|
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