View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_low_17 (Length: 273)
Name: NF5022_low_17
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 3017921 - 3018170
Alignment:
| Q |
18 |
cttgactcaataatcatgcagtgaactttggtgcaaatgatgcatcaatcatgtgggaaacttcggtgcttttggttaagaattttttgtgccaaattag |
117 |
Q |
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| T |
3017921 |
cttgactcaataatcatgcagtgaactttggtgcaaatgatgcatcaatcatgtgggaaatttcggtgcttttggttaagaattttttgtgccaaattag |
3018020 |
T |
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| Q |
118 |
ttgtttatctttaaaaatattttctagttaagaccaaacttcatatatgta----tgtttatagatattgccaaatttctttgcttgattattctaaaag |
213 |
Q |
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| T |
3018021 |
ttgtttatctttaaaaatattttctagttaagaccaaacttcatatatgtatgtttgtttatagatattgccaaatttctttgcttgattattctaaaag |
3018120 |
T |
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| Q |
214 |
gtaagtttcatatgcaattcatctagataatattctaattacatcctatg |
263 |
Q |
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| T |
3018121 |
gtaagtttcatatgcaattcatctagataatattctaattacatcctatg |
3018170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 3021080 - 3021251
Alignment:
| Q |
63 |
caatcatgtgggaaacttcggtgcttttggttaagaattttttgtgccaaattagttgttt-atctttaaaaatattttcta-------gttaagaccaa |
154 |
Q |
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| T |
3021080 |
caatcatgtggtgaacttcagtgct---ggctaagaattttttgtgccaaattagttgttttatctttaaaaatatttactacttaagagttaagaccaa |
3021176 |
T |
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| Q |
155 |
acttcatatatgtatgtttata--gatattgccaaatttctttgcttgattattctaaaaggtaagtttcatatgc |
228 |
Q |
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| T |
3021177 |
acttcatat-tgtatgtttatacagatattgccaaaagtcttttcttgactattctaaaaggtaagttgcatatgc |
3021251 |
T |
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