View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_low_21 (Length: 255)
Name: NF5022_low_21
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 49766003 - 49766229
Alignment:
| Q |
19 |
accttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttgaagatgaagatgatgtcatcatg |
118 |
Q |
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| T |
49766003 |
accttgttttcctcctccatttacagcatcatcagcagaattagaagaaacccaataagatgaagtagatgaatttgaagatgaagatgatgtcatcatg |
49766102 |
T |
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| Q |
119 |
aaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtcttgagcacggttcacagaagcaatac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49766103 |
aaaccactgaatattcctccacaccttctaagtactctctctttcatgcaatgatggtgatggtggtggtggtcttgagcacggttcacagaagcaatac |
49766202 |
T |
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| Q |
219 |
cattagaattagcaactactccctttg |
245 |
Q |
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|||||||| |||||||||||||||||| |
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| T |
49766203 |
cattagaactagcaactactccctttg |
49766229 |
T |
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