View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5022_low_6 (Length: 594)
Name: NF5022_low_6
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_low_6 |
 | |
|
| [»] scaffold0147 (4 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 18 - 582
Target Start/End: Complemental strand, 1762644 - 1762080
Alignment:
| Q |
18 |
ctagcaacattaagcaccatgatgttgtaattgcagtagtctcatatccagcaaagaatatatttttgcaattatctatcatgaatctttctcttgaggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1762644 |
ctagcaacattaagcaccatgatgttgtaattgcagtagtctcatatccagcaaagaatatatttttgcaattatctatcatgaatctttctcttgaagt |
1762545 |
T |
|
| Q |
118 |
ggcgtttggtaagaaactgtcaccatcactctcacatttctttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1762544 |
ggcgtttggtaagaaactgtcaccatcactctcacatttctttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgt |
1762445 |
T |
|
| Q |
218 |
nnnnnnatcagctttgatatctttgagcttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaaccaaattatgatt |
317 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1762444 |
tgttttatcagctttgatatctttgaacttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaaccaaattatgatt |
1762345 |
T |
|
| Q |
318 |
ccattttcaacattagtatcatcactaacaataatagtagagaacataatattatatatgaaataaattaacctcgtatcataatatgataaagattaaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1762344 |
ccattttcaacattagtatcatcactaacaataatagtagagaacataatattatatatgaaataaattaacctcgtatcataatatgataaagattaaa |
1762245 |
T |
|
| Q |
418 |
catacctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctccc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1762244 |
catacctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctccc |
1762145 |
T |
|
| Q |
518 |
aaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctg |
582 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1762144 |
aaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctg |
1762080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 471 - 582
Target Start/End: Complemental strand, 25196765 - 25196654
Alignment:
| Q |
471 |
tctctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaa |
570 |
Q |
| |
|
||||||||||||| || |||||| |||||||||||||||||||||||||||| |||| |||||||||||| | || ||| ||| ||| |||| |||| |
|
|
| T |
25196765 |
tctctaagctttgcgaatatttcttttccttcaacataattgctcccaaaacacactctagcaattatgtcagccgacaagcttcgcaaatcttcatcaa |
25196666 |
T |
|
| Q |
571 |
ctttaatctctg |
582 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
25196665 |
ctgtaatctctg |
25196654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 25197257 - 25197174
Alignment:
| Q |
26 |
attaagcaccatgatgttgtaattgcagtagtctcatatccagcaaagaatatatttttgcaattatctatcatgaatctttct |
109 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||| ||||||||||||||| ||| || |||||||| ||||| |||||| |
|
|
| T |
25197257 |
attaagcaccatgttgatgtaattgcagtagtatcatgcccagcaaagaatatagatttacagttatctataatgaacctttct |
25197174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 239 - 348
Target Start/End: Complemental strand, 25197050 - 25196942
Alignment:
| Q |
239 |
tttgagcttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaaccaaattatgattccattttcaacattagtatca |
338 |
Q |
| |
|
|||||| ||||||||||||| | |||||| |||||| |||| || ||||||||||| || || ||| | |||||||| |||||| | ||||||||| || |
|
|
| T |
25197050 |
tttgagtttatctctttctccagtctccatatttgtatatttctcttgtttggcaagtacct-aaataagattatgataccatttcccacattagtacca |
25196952 |
T |
|
| Q |
339 |
tcactaacaa |
348 |
Q |
| |
|
| |||||||| |
|
|
| T |
25196951 |
ttactaacaa |
25196942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 22 - 348
Target Start/End: Complemental strand, 19207659 - 19207340
Alignment:
| Q |
22 |
caacattaagcaccatgatgttgtaattgcagtagtctcatatccagcaaagaatatatttttgcaattatctatcatgaatctttctcttgaggtggcg |
121 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||| |||| ||| |||||||||||| ||||||| |||||||| |||||||| ||| |||| | | |
|
|
| T |
19207659 |
caacattaagcaccaagatgatgtaattgcagtagtatcatgtcccgcaaagaatatagttttgcagttatctataatgaatctgtcttgtgagattgaa |
19207560 |
T |
|
| Q |
122 |
tttggtaagaaactgtcaccatcactctcacatttctttgcactatcaagtatcatttgcaagagatcttgttcatcatgagcatcaatttggcgnnnnn |
221 |
Q |
| |
|
|||| ||||| | |||| | |||||| || ||||||| ||||||||||||||||||||||||||||||| || | || |||||| |
|
|
| T |
19207559 |
tttgaaaagaagccatcactgcc---ctcacaattttttgcaccctcaagtatcatttgcaagagatcttgttcat---gaccttcctcttggcgttgtt |
19207466 |
T |
|
| Q |
222 |
nnatcagctttgatatctttgagcttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaaccaaattatgattccat |
321 |
Q |
| |
|
| ||||| ||||| |||||| |||||||||||||||||||||| || |||||||||||||||||||| || ||||||||| || || ||| | |||| |
|
|
| T |
19207465 |
ttacgagcttggatatatttgagtttatctctttctctaatctccatatctgtctattgcttttgtttggtaagtatctaaaa-catatcatggtaccat |
19207367 |
T |
|
| Q |
322 |
tttcaacattagtatcatcactaacaa |
348 |
Q |
| |
|
|||| ||||||||||||||| |||||| |
|
|
| T |
19207366 |
tttccacattagtatcatcattaacaa |
19207340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 582
Target Start/End: Complemental strand, 19207257 - 19207093
Alignment:
| Q |
418 |
catacctaaagcctggaattccagcaaaaattttgcaaatgatgttttgaagttctctaagctttgaaaaaatttctcttccttcaacataattgctccc |
517 |
Q |
| |
|
||||||||||||| ||||||||| || | || ||| | | || ||| ||| ||||||||||||| || |||||| ||||||| |||||||||||||| |
|
|
| T |
19207257 |
catacctaaagcccggaattccaacatatatcttggagaggagttttataagatctctaagctttgtgaatatttcttttccttcgacataattgctccc |
19207158 |
T |
|
| Q |
518 |
aaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactttaatctctg |
582 |
Q |
| |
|
||||| | |||| |||||||||||| |||| ||| ||| || |||| |||||||||||||||| |
|
|
| T |
19207157 |
aaaactaactctagcaattatgtcagctgacaagcttcgcagatcttcatcaactttaatctctg |
19207093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 9766 - 9688
Alignment:
| Q |
227 |
agctttgatatctttgagcttatctctttctctaatctccacatttgtctattgcttttgtttggcaaatatctaaaac |
305 |
Q |
| |
|
||||||||||| |||||| | ||||||| ||| |||||||| || ||||||||||||||||||||||| |||||||||| |
|
|
| T |
9766 |
agctttgatatatttgagttaatctcttcctccaatctccatatctgtctattgcttttgtttggcaagtatctaaaac |
9688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 474 - 582
Target Start/End: Complemental strand, 9527 - 9419
Alignment:
| Q |
474 |
ctaagctttgaaaaaatttctcttccttcaacataattgctcccaaaacaagctcttgcaattatgtcacctgataagtttctcaagtcttggtcaactt |
573 |
Q |
| |
|
|||||||||| || |||||| |||||| ||||||||||||||||||||| |||| |||||||||||| |||| ||| ||| || |||| ||||| || |
|
|
| T |
9527 |
ctaagctttgtgaatatttcttttcctttgacataattgctcccaaaacaaactctagcaattatgtcagctgacaagcttcgcagatcttcgtcaattt |
9428 |
T |
|
| Q |
574 |
taatctctg |
582 |
Q |
| |
|
| ||||||| |
|
|
| T |
9427 |
ttatctctg |
9419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 9965 - 9885
Alignment:
| Q |
22 |
caacattaagcaccatgatgttgtaattgcagtagtctcatatccagcaaagaatatatttttgcaattatctatcatgaa |
102 |
Q |
| |
|
|||||||||||||||||| | |||||||| ||||| || | |||||| ||||||||| ||||||| |||||||| ||||| |
|
|
| T |
9965 |
caacattaagcaccatgacgctgtaattgaggtagtatcgtgtccagcgaagaatatagttttgcagttatctataatgaa |
9885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 9842 - 9798
Alignment:
| Q |
148 |
ctcacatttctttgcactatcaagtatcatttgcaagagatcttg |
192 |
Q |
| |
|
|||||| ||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
9842 |
ctcacaattcttagcaccctcaagtatcatttgcaagagatcttg |
9798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University