View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_low_7 (Length: 552)
Name: NF5022_low_7
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 6 - 534
Target Start/End: Original strand, 2231691 - 2232220
Alignment:
| Q |
6 |
agtgagatgaaatagtcctatgcaatgtagtgaaacataataccggttcaaatggaagagatgtccacatttagtgtctgagaaatcctcgaacataata |
105 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231691 |
agtgaaatggaatagtcctatgcaatgtagtgaaacataataccggttcaaatggaagagatgtccacatttagtgtctgagaaatcctcgaacataata |
2231790 |
T |
|
| Q |
106 |
tagagggatgcttgtggattatctnnnnnnn-tgtattttttgtcttatttccattatacattttcataatatatggtgatcatagacttgaattgaatg |
204 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
2231791 |
tagagggatgcttgtggattatctaaaaaaaatgtattttttgtctcatttccattatacgttttcataatatatggtgatcatagacttgaattgaatg |
2231890 |
T |
|
| Q |
205 |
aatagctctatagttcatatatctcaagaaatcattctctattcagctatgggaccatttagaggaataactgaagatttcaaaggaagacttgaatttt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2231891 |
aatagctctatagttcatatatctcaagaaatcattctctattcagctatgggaccatttagaggaataactgaagatttcaaaggaagacttgaatttt |
2231990 |
T |
|
| Q |
305 |
ataaacaagattggatttgtgcaatttgtactggtgttagaatattggccccaactttctacatattctttgcttctgcacttcctgttattgcttttgg |
404 |
Q |
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| T |
2231991 |
ataaacaagattggatttgtgcaatttgtactggtgttagaatattggccccaactttctacatattctttgcttctgcacttcctgttattgcttttgg |
2232090 |
T |
|
| Q |
405 |
agaacaacttaatagagaaacaggtaaatgaccaaaacctttcaaatatagtttcaaaattcaaatatttatgttatttgatctatggattttttacact |
504 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2232091 |
agaacaacttaatagagaaacaggtaaatgaccaaaacctttcaaatatagtttcaaaattcaaatatttatgttatttgatctatggattttttacact |
2232190 |
T |
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| Q |
505 |
gtaattagtcatagtcgtcttatcattaaa |
534 |
Q |
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| T |
2232191 |
gtaattagtcatagtcgtcttatcattaaa |
2232220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 415
Target Start/End: Complemental strand, 49708719 - 49708650
Alignment:
| Q |
346 |
atattggccccaactttctacatattctttgcttctgcacttcctgttattgcttttggagaacaactta |
415 |
Q |
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|||||||| ||||||||||||||||| | ||| || || ||||| ||||||||||| ||||||||||||| |
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| T |
49708719 |
atattggctccaactttctacatattttctgcgtccgctcttccggttattgctttcggagaacaactta |
49708650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 413
Target Start/End: Complemental strand, 34927289 - 34927240
Alignment:
| Q |
364 |
tacatattctttgcttctgcacttcctgttattgcttttggagaacaact |
413 |
Q |
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|||||||| |||||||| ||| ||||||||||| |||||||||| ||||| |
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| T |
34927289 |
tacatattttttgcttcagcaattcctgttatttcttttggagagcaact |
34927240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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