View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5022_low_8 (Length: 545)
Name: NF5022_low_8
Description: NF5022
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5022_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 3018147 - 3018634
Alignment:
| Q |
1 |
ataatattctaattacatcctatggtgactttataagcaaagaaatcattttttaggttcattgtttaacggatgtgtctagtctataccattattcagg |
100 |
Q |
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| T |
3018147 |
ataatattctaattacatcctatggtgactttataagcaaagaaatcattttttaggttcattgtttaacggatgtgtctagtctataccgttatttagg |
3018246 |
T |
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| Q |
101 |
gaacattnnnnnnnnttgtttataataatggatgggtacattacaacgatgtatcagccccaccgccagacgtgtccatttgagtgaatcaatctttctt |
200 |
Q |
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| T |
3018247 |
gaacattaaaaaaaattgtttataataatggatgggtacattacaacgatgtatcagccccaccgc-agacgtgtccatttgagtgaatcaatctttctt |
3018345 |
T |
|
| Q |
201 |
ttagatggcttggatacatacctcatagggttcgatacatgtcaaagcgggtgtttcaccagtttggttacgtccagaccatcccaagccatccacataa |
300 |
Q |
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| T |
3018346 |
ttagatggcttggatacatacctcatagggttcgatacatgtcaaagcgggtgttgcgccagtttggttacgtccagaccatcccaagccatccacataa |
3018445 |
T |
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| Q |
301 |
gagtgcaaatcccaaggtgaacacaactagcgcaatatcttgattatgtgttaaatcggtgagatttgggtatgcctgctccgattggtctaaagacaac |
400 |
Q |
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| T |
3018446 |
gagtgcaaatcccaaggtga--acaactagcataatatcttgattatgtgttaaatcagtgagatttgggtatgcctgctccgactggtctaaagacaac |
3018543 |
T |
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| Q |
401 |
aattgaatacataagatggtattttgccatttcgcatccatacattgcatgtcagcaagaggatgctcatatcctgattcgtcaatttgcc |
491 |
Q |
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| T |
3018544 |
aattgaatacataagatggtattttgccatttcgcatccatacattgcatgtcagcaggaggatgctcatatcctgattcgtcaatttgcc |
3018634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 501 - 535
Target Start/End: Original strand, 3018658 - 3018692
Alignment:
| Q |
501 |
ggtgttatgcagtaaacacatattctgcctctgtg |
535 |
Q |
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| T |
3018658 |
ggtgttatgcagtaaacacatattctgcctctgtg |
3018692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 24141722 - 24141665
Alignment:
| Q |
150 |
tgtatcagccccaccgccagacgtgtccatttgagtgaatcaatctttcttttagatg |
207 |
Q |
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| T |
24141722 |
tgtatcagccccaccgccagacatgtccgttcgagcgaatcagtctttattttggatg |
24141665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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